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Issue tracker for Open Targets Platform and Open Targets Genetics Portal
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The final list of features for the release #3521

Open addramir opened 1 month ago

addramir commented 1 month ago

We need a final list of features for the December release and the list of features that we could implement in the future.

@xyg123 could you please share the google sheet we discussed with features for an approval? Each feature needs to be documented in gentropy on later stages.

addramir commented 1 month ago

I just found the same issue that was closed yesterday: https://github.com/opentargets/issues/issues/3458 Should we reopen that one and close this?

addramir commented 1 month ago

Summary of feature list discussion (@xyg123 notes): Will add currently missing features from the genetics portal implementation, this includes:

molQTL neglog(p-values) Neighbourhood features for distance-based features. Footprint distance features. Will also add the interval features, although doubts were raised regarding their relevance. Gene count within 500kb window of studyLocus The following features will not be included:

Distance features related to sentinel variants Polyphen features. Protein attenuation. Additional features to be scoped after the release:

Credible set size/ top posterior probability at a studyLocus, to indicate performance of finemapping. QTL direction of effect (betas). ABC model.

addramir commented 1 month ago

https://docs.google.com/spreadsheets/d/1wUs1AprRCCGItZmgDhc1fF5BtwCSosdzFv4NQ8V6Dtg/edit?gid=0#gid=0

addramir commented 4 weeks ago

Currently 37 features.