We want to add the confidence of a credible set as a L2G feature.
Background
This is an evolution of a former feature, the fine mapping method used to derive the credible set.
The confidence is more granular, and we want to experiment how it contributes to the model.
This is the model we have assumed to score the confidence:
FINEMAPPED_IN_SAMPLE_LD: 1
FINEMAPPED_IN_SAMPLE_LD: 0.75
PICSED_SUMMARY_STATS: 0.5
PICSED_SUMMARY_STATS: 0.25
UNKNOWN: 0
Tasks
[ ] Create new feature as part of the feature factory
We want to add the confidence of a credible set as a L2G feature.
Background
This is an evolution of a former feature, the fine mapping method used to derive the credible set. The confidence is more granular, and we want to experiment how it contributes to the model.
This is the model we have assumed to score the confidence:
Tasks