opentargets / issues

Issue tracker for Open Targets Platform and Open Targets Genetics Portal
https://platform.opentargets.org https://genetics.opentargets.org
Apache License 2.0
12 stars 2 forks source link

PheWAS: link from evidence to ePMC shows ID_1 #88

Closed ElaineMcA closed 5 years ago

ElaineMcA commented 6 years ago

Go to this page:

https://www.targetvalidation.org/evidence/ENSG00000114013/EFO_0000540?view=sec:genetic_association

Link out from PheWAS evidence

https://europepmc.org/abstract/MED/1?fromSearch=singleResult&fromQuery=EXT_ID:1

Note: GWAS evidence links work as expected.

Needs follow-up with ePMC as we build the URL with the query, but the ID (i.e. ‘1’) is like that in the data.

screen shot 2018-08-23 at 15 40 35

ElaineMcA commented 6 years ago

Code has been fixed in PheWAS code. Will be included in 18.10 (was not included in 18.08 as we reverted to old file for metrics reasons).

MichaelaEBI commented 6 years ago

Will be fixed in 18.12 - we used the old PheWAS evidence file again because we are still working on the PheWAS module. This will be sorted out shortly so that a new, corrected file is available for 18.12.

MichaelaEBI commented 5 years ago

Fixed in 18.12!