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opentargets
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orchestration
Open Targets pipeline orchestration layer
Apache License 2.0
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refactor(ukb_ppp_eur): ingestion and finemapping
#34
project-defiant
closed
1 month ago
0
feat: GWAS catalog top-hit DAG
#33
d0choa
closed
1 month ago
0
feat: allow for force reinstall dependencies on cluster when set up
#32
project-defiant
closed
1 month ago
0
fix: remove lut and unpablished from gwas_curation_update
#31
addramir
closed
1 month ago
1
feat: additional reasons for invalid studies and credible sets
#30
d0choa
closed
2 months ago
0
feat: variant-index refactoring
#29
project-defiant
closed
1 month ago
0
Szsz add vi to genetics etl
#28
project-defiant
closed
2 months ago
0
Unify existing gentropy DAGs
#27
project-defiant
closed
2 months ago
0
refactor: genetic dags
#26
project-defiant
closed
2 months ago
1
fix: platform becomes pipeline dag
#25
javfg
closed
2 months ago
0
feat: add ETL stage to the platform pipeline
#24
javfg
closed
2 months ago
1
feat: include LD_CLUMPED QC flag in credible set validation
#23
d0choa
closed
2 months ago
0
feat: add FinnGen UKB meta-analysis ingestion DAG
#22
tskir
closed
2 months ago
0
feat: synced gentropy dags and latest configs to orchestration
#21
project-defiant
closed
2 months ago
0
docs: describe gwas catalog data bucket content
#20
project-defiant
closed
2 months ago
0
docs: fix README formatting
#19
tskir
closed
2 months ago
0
feat: add validation to genetics etl
#18
project-defiant
closed
2 months ago
2
feat: move ukb_ppp_eur datasource ingestion to orchestration
#17
project-defiant
closed
2 months ago
0
feat: Allow gcs paths without prefix
#16
project-defiant
closed
2 months ago
1
feat: extract config for finngen ingestion to yaml file
#15
project-defiant
closed
2 months ago
2
feat: pis stage for the platform orchestration dag
#14
javfg
closed
2 months ago
4
feat: finngen ingestion
#13
project-defiant
closed
2 months ago
4
feat: gwas catalog processing with google batch operator
#12
project-defiant
closed
3 months ago
0
feat: platform pis stage first prototype
#11
javfg
closed
4 months ago
3
feat: finemapping template and DAG for UKB PPP
#10
tskir
closed
2 months ago
1
refactor: code clenaup
#9
project-defiant
closed
4 months ago
0
fix: pre-commit syntax in Makefile
#8
tskir
closed
4 months ago
0
feat: add interface with batch operators and refactor the utils
#7
ireneisdoomed
closed
4 months ago
0
chore: start Poetry shell at the end of environment configuration
#6
tskir
closed
4 months ago
0
docs: update and migrate from Gentropy
#5
tskir
closed
4 months ago
0
feat: fetch manifest from github
#4
project-defiant
closed
4 months ago
0
feat: support for dependabot
#3
d0choa
closed
4 months ago
0
feat: minimal testing suite
#2
d0choa
closed
4 months ago
0
feat: initial config and airflow layer from gentropy
#1
project-defiant
closed
4 months ago
1
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