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openvax
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vaxrank
Ranked vaccine peptides for personalized cancer immunotherapy
Apache License 2.0
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Add gene summary to each variant
#153
iskandr
opened
6 years ago
1
Computing some counts for the vaxrank report in the core logic
#152
julia326
closed
6 years ago
0
Change vaccine peptide sort
#151
julia326
opened
6 years ago
0
Doc edits
#150
julia326
closed
6 years ago
2
Adding initial Vaxrank (detailed) docs for ReadTheDocs integration.
#149
julia326
closed
7 years ago
2
Neoepitope XLSX report
#148
julia326
closed
7 years ago
7
Add option to generate simple Excel neoepitope report
#147
julia326
closed
7 years ago
0
Small report fixes
#146
julia326
closed
7 years ago
4
Travis config updates
#145
julia326
closed
7 years ago
4
Add more counts to top of vaxrank report
#144
iskandr
closed
6 years ago
0
Minimal epitope report
#143
julia326
closed
7 years ago
9
Minimal epitope report
#142
julia326
closed
7 years ago
0
Some changes in preparation for computing a minimal epitope report:
#141
julia326
closed
7 years ago
4
Adding an argument to specify the file path for the vaxrank Python log
#140
julia326
closed
7 years ago
4
Better clarify the terms used throughout the PDF report
#139
armish
opened
7 years ago
0
More documentation needed
#138
iskandr
opened
7 years ago
0
ASCII report numbers are off
#137
julia326
closed
4 years ago
3
Bump mhctools, isovar, vaxrank versions.
#136
julia326
closed
7 years ago
1
Removing the default limit on the number of mutations in report
#135
julia326
closed
7 years ago
5
Adding mhctools error catch-all to vaxrank
#134
julia326
closed
7 years ago
3
Add tensorflow/theano setup to Travis config
#133
julia326
closed
7 years ago
2
Cut edge disco cases
#132
armish
closed
7 years ago
3
AssertionError deep in the stack
#131
julia326
closed
7 years ago
2
Vaxrank fails when run within a folder that the user doesn't have write access to due to logging activity
#130
armish
closed
7 years ago
0
Increase isovar dependency and current vaxrank version.
#129
julia326
closed
7 years ago
2
Add additional epitope scoring options
#128
iskandr
opened
7 years ago
0
ValueError: Wrong reference sequence for variant
#127
ihodes
closed
7 years ago
1
Upping required mhctools version; upping vaxrank version for release.
#126
julia326
closed
7 years ago
2
Variant effect has a null `aa_mutation_start_offset`
#125
julia326
closed
7 years ago
1
Explicitly specifying epitope lengths we want to check in vaxrank test script
#124
julia326
closed
7 years ago
1
Move to == for dep management
#123
julia326
closed
6 years ago
0
ValueError: Expected 636 peptide predictions but got 0
#122
ihodes
closed
7 years ago
5
Vaxrank doesn't create an XLSX file although being called with the `--output-xlsx-report` argument
#121
armish
closed
7 years ago
1
Upping vaxrank version: 0.4.1 -> 0.4.2.
#120
julia326
closed
7 years ago
1
use ensembl 87 on Travis
#119
iskandr
closed
7 years ago
0
pulled out generator for shellinford into own fn, fix unicode for Py2
#118
iskandr
closed
7 years ago
0
Fix mhctools usage
#117
iskandr
closed
7 years ago
2
Fix crashing report when there are no variants
#116
julia326
closed
7 years ago
2
Omit peptides with no mutant epitopes
#115
julia326
closed
7 years ago
0
Vaxrank fails at saving results when there are no vaccines available
#114
armish
closed
6 years ago
0
Report fixes
#113
ihodes
closed
7 years ago
1
Fix numbering of variants
#112
ihodes
closed
7 years ago
0
./run-vaxrank-b16-test-data.sh no longer works
#111
ihodes
closed
7 years ago
1
Change peptide filtering to never violate `combined_score` order
#110
iskandr
opened
7 years ago
0
Update vaxrank to use include-mismatches-after-variant
#109
julia326
closed
7 years ago
2
Optionally filter by mismatches after variant
#108
julia326
closed
7 years ago
0
Count in ASCII report is wrong
#107
ihodes
closed
7 years ago
0
shortening sheet name in Excel output
#106
iskandr
closed
7 years ago
3
Update manufacturability criteria
#105
julia326
opened
7 years ago
0
Allow multiple peptide lengths
#104
julia326
opened
7 years ago
1
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