openworm OpenData issues

openworm / OpenData

Repo for Google Summer of Code Open Data Project 2019

MIT License

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Start write up process

#30 slarson opened 4 years ago
0
Address the ~140 GB worm.db issue with movement data

#29 slarson opened 4 years ago
3
Ask Emmons lab about parameters such as scale, z-distance for each data set

#28 slarson opened 4 years ago
0
Add a test to the POW test suite that validates the uploading of movement metadata has worked

#27 slarson opened 5 years ago
0
Create yaml files for each data file in the leifer and in the kato data sets

#26 slarson opened 5 years ago
1
Receive and analyse new data set from Emmons Lab

#25 slarson opened 5 years ago
2
Remove unwanted points from standard worm

#24 EST09 opened 5 years ago
0
Set up a session with Mark Watts to discuss PyOpenWorm Integration with Zenodo content

#23 slarson opened 5 years ago
0
Do a metadata comparison between movement analysis db, liefer data, zimmer data

#22 slarson opened 5 years ago
0
Build a streaming pipeline to pull metadata from Zenodo movement db into a zipfile

#21 slarson opened 5 years ago
0
Figure out which neurons correspond to which row of heatmap: Kato dataset

#20 EST09 opened 5 years ago
0
Neuronal Analysis of Leifer Dataset

#19 EST09 opened 5 years ago
1
Draft for clustering points on Standard Worm

#18 EST09 closed 4 years ago
0
Set up follow up session with Scott Emmons to show point cloud progress

#17 slarson opened 5 years ago
0
Produce 3D interactive view of the point cloud from the standard worm dataset

#16 slarson opened 5 years ago
0
Reduce the points in the standard worm dataset

#15 slarson opened 5 years ago
0
Experiement with creating a heat map from the neuronal-analysis dataset

#14 slarson opened 5 years ago
0
Integrating Movement Metadata into POW

#13 EST09 opened 5 years ago
2
Talk to Gopel Sarma

#12 EST09 closed 4 years ago
0
Test uploading into Zenodo

#11 slarson closed 5 years ago
1
Straighten Curved Worm

#10 EST09 opened 5 years ago
1
Have key conversations with collaborators

#9 slarson closed 5 years ago
0
Determine how to operationalize FAIR principles for the data sets we identify

#8 slarson closed 5 years ago
3
Find references on different dynamical types of c. elegans neurons

#7 slarson closed 5 years ago
2
Download and have a look at the first candidate standard worm dataset

#6 slarson closed 5 years ago
4
Read paper about making a ML model of worm movement

#5 slarson closed 5 years ago
1
Send / find materials about linear / nonlinear image transformations (volumes)

#4 slarson closed 5 years ago
0
Send materials about standard worm

#3 slarson closed 5 years ago
1
Prepare slide presentation on current understanding of project

#2 slarson closed 5 years ago
1
Digest FAIR Principles

#1 slarson closed 5 years ago
2