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openworm / org.geppetto.model.neuroml

NeuroML Model Bundle for Geppetto
http://www.geppetto.org/
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Error while building development branch #40

Closed dkruchinin closed 9 years ago

dkruchinin commented 10 years ago

Development branch of model.neuroml doesn't seem to built (latest commit: 0ab604d1d8c474a124e118714242764f22c29bd6)

...
[INFO] 8 errors
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 19.893 s
[INFO] Finished at: 2014-10-22T16:39:42+01:00
[INFO] Final Memory: 21M/51M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project model.neuroml: Compilation failure: Compilation failure:
[ERROR] /Users/dk/development/projects/openworm/geppetto/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/PopulateNeuroMLModelTreeUtils.java:[418,40] cannot find symbol
[ERROR] symbol:   method getType()
[ERROR] location: variable gateHHRates of type org.neuroml.model.GateHHRates
[ERROR] /Users/dk/development/projects/openworm/geppetto/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/PopulateNeuroMLModelTreeUtils.java:[419,119] cannot find symbol
[ERROR] symbol:   method getType()
[ERROR] location: variable gateHHRates of type org.neuroml.model.GateHHRates
[ERROR] /Users/dk/development/projects/openworm/geppetto/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/PopulateNeuroMLModelTreeUtils.java:[436,43] cannot find symbol
[ERROR] symbol:   method getType()
[ERROR] location: variable gateHHRatesInf of type org.neuroml.model.GateHHRatesInf
[ERROR] /Users/dk/development/projects/openworm/geppetto/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/PopulateNeuroMLModelTreeUtils.java:[437,122] cannot find symbol
[ERROR] symbol:   method getType()
[ERROR] location: variable gateHHRatesInf of type org.neuroml.model.GateHHRatesInf
[ERROR] /Users/dk/development/projects/openworm/geppetto/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/PopulateNeuroMLModelTreeUtils.java:[455,43] cannot find symbol
[ERROR] symbol:   method getType()
[ERROR] location: variable gateHHRatesTau of type org.neuroml.model.GateHHRatesTau
[ERROR] /Users/dk/development/projects/openworm/geppetto/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/PopulateNeuroMLModelTreeUtils.java:[456,122] cannot find symbol
[ERROR] symbol:   method getType()
[ERROR] location: variable gateHHRatesTau of type org.neuroml.model.GateHHRatesTau
[ERROR] /Users/dk/development/projects/openworm/geppetto/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/PopulateNeuroMLModelTreeUtils.java:[471,41] cannot find symbol
[ERROR] symbol:   method getType()
[ERROR] location: variable gateHHTauInf of type org.neuroml.model.GateHHTauInf
[ERROR] /Users/dk/development/projects/openworm/geppetto/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/PopulateNeuroMLModelTreeUtils.java:[472,120] cannot find symbol
[ERROR] symbol:   method getType()
[ERROR] location: variable gateHHTauInf of type org.neuroml.model.GateHHTauInf
adrianq commented 10 years ago

@dkruchinin This is not working because @tarelli and myself were trying to update geppetto to the lastest version of NeuroML and LEMS and these properties are not there anymore. We are already trying to fix that.. Let you know.

dkruchinin commented 10 years ago

@adrianq Oh, ok. I'll reset my copy to one of older commits then. Thanks for explanation,

adrianq commented 10 years ago

Fixed! and we are working with the latest version!

skhayrulin commented 9 years ago

I'm trying to build model.neuroml from development branch but it finishes with next message:

...
[WARNING] COMPILATION WARNING : 
[INFO] -------------------------------------------------------------
[WARNING] /home/serg/git/openworm/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/NeuroMLAccessUtility.java: Some input files use unchecked or unsafe operations.
[WARNING] /home/serg/git/openworm/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/NeuroMLAccessUtility.java: Recompile with -Xlint:unchecked for details.
[INFO] 2 warnings 
[INFO] -------------------------------------------------------------
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] /home/serg/git/openworm/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/modeltree/PopulateNeuroMLModelTreeUtils.java:[62,37] cannot find symbol
  symbol:   class PlotMetadataNode
  location: package org.neuroml.export.info.model
[ERROR] /home/serg/git/openworm/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/modeltree/PopulateNeuroMLModelTreeUtils.java:[852,41] cannot find symbol
  symbol:   class PlotMetadataNode
  location: class org.geppetto.model.neuroml.utils.modeltree.PopulateNeuroMLModelTreeUtils
[ERROR] /home/serg/git/openworm/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/modeltree/PopulateNeuroMLModelTreeUtils.java:[852,91] cannot find symbol
  symbol:   method getPlotMetadataNode()
  location: variable expressionNode of type org.neuroml.export.info.model.ExpressionNode
[INFO] 3 errors 
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Compilation failure

/home/serg/git/openworm/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/modeltree/PopulateNeuroMLModelTreeUtils.java:[62,37] cannot find symbol
  symbol:   class PlotMetadataNode
  location: package org.neuroml.export.info.model
/home/serg/git/openworm/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/modeltree/PopulateNeuroMLModelTreeUtils.java:[852,41] cannot find symbol
  symbol:   class PlotMetadataNode
  location: class org.geppetto.model.neuroml.utils.modeltree.PopulateNeuroMLModelTreeUtils
/home/serg/git/openworm/org.geppetto.model.neuroml/src/main/java/org/geppetto/model/neuroml/utils/modeltree/PopulateNeuroMLModelTreeUtils.java:[852,91] cannot find symbol
  symbol:   method getPlotMetadataNode()
  location: variable expressionNode of type org.neuroml.export.info.model.ExpressionNode
...
adrianq commented 9 years ago

@skhayrulin You have to go to your .m2 folder (you will find it in your home folder) and delete this folder /.m2/repository/org/neuroml/export then execute a mvn install. When executing mvn install it will download the lastest version of the export lib and hopefully everything is gonna work.

borismarin commented 9 years ago

That is so intuitive...

On 24 November 2014 at 11:33, adrianq notifications@github.com wrote:

@skhayrulin https://github.com/skhayrulin You have to go to your .m2 folder (you will find it in your home folder) and delete this folder /.m2/repository/org/neuroml/export then execute a mvn install. When executing mvn install it will download the lastest version of the export lib and hopefully everything is gonna work.

Reply to this email directly or view it on GitHub https://github.com/openworm/org.geppetto.model.neuroml/issues/40#issuecomment-64181215 .

adrianq commented 9 years ago

@borismarin No worries as I am working in the same room as you and every time you have a problem you don't hesitate on bother me you won't have this problem :)

skhayrulin commented 9 years ago

@adrianq thanks! That works :+1: !