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openworm / robots

C. elegans robots
http://tom.portegys.com/research.html#c_elegans_robot
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Duplicate model #1

Open pgleeson opened 7 years ago

pgleeson commented 7 years ago

@portegys The code for the Boyle, Berri and Cohen model is already on GitHub at https://github.com/OpenSourceBrain/CelegansNeuromechanicalGaitModulation. There were some minor updates to the original code to get some of the scripts running.

Might be better just to point at that from here and make updates etc. there if required?

portegys commented 7 years ago

@pgleeson Right that's where I got it from. I did make a lot of changes to get it to run as a simulator for the robot, including wrapping it into a python module. Probably Boyle et al don't want that stuff merged into their code. Do you think a permanent fork would be the best choice?

On Wed, May 31, 2017 at 9:09 AM, Padraig Gleeson notifications@github.com wrote:

@portegys https://github.com/portegys The code for the Boyle, Berri and Cohen model is already on GitHub at https://github.com/OpenSourceBrain/ CelegansNeuromechanicalGaitModulation. There were some minor updates to the original code to get some of the scripts running.

Might be better just to point at that from here and make updates etc. there if required?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/openworm/robots/issues/1, or mute the thread https://github.com/notifications/unsubscribe-auth/AAu7sKKz0cp2QF4akEZDBgOOzmMzg6AAks5r_ZC9gaJpZM4Nr237 .

pgleeson commented 7 years ago

@portegys It should be fine to have a copy of the code here.

Would be good though to have a big notice in the README that this is the main repo for that model...

portegys commented 7 years ago

Here's the first lines of the Readme:

WormSim c elegans simulation engine from Boyle, Berri and Cohen 2012

See Boyle, Berri and Cohen, Gait modulation in C. elegans: an integrated neuromechanical model, Front. Comput. Neurosci., 2012. git clone https://github.com/OpenSourceBrain/CelegansNeuromechanicalGaitModulation.git

On Fri, Jun 23, 2017 at 6:56 AM, Padraig Gleeson notifications@github.com wrote:

@portegys https://github.com/portegys It should be fine to have a copy of the code here.

Would be good though to have a big notice in the README https://github.com/openworm/robots/blob/master/WormSim/README.md that this https://github.com/OpenSourceBrain/CelegansNeuromechanicalGaitModulation is the main repo for that model...

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/openworm/robots/issues/1#issuecomment-310672045, or mute the thread https://github.com/notifications/unsubscribe-auth/AAu7sM-th0qtmevHTrQ0GCrpDYCAF4cVks5sG8P1gaJpZM4Nr237 .