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LTR_retriever
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813529/
GNU General Public License v3.0
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Errors in running LTR.identifier.pl
#26
caixu0518
closed
5 years ago
2
INT flag
#25
YuntaoTan
closed
5 years ago
1
INT flag
#24
YuntaoTan
closed
5 years ago
1
script to generate the Figure 4 in the LAI paper
#23
xinshuaiqi
closed
5 years ago
1
LTRharvest as input
#22
xinshuaiqi
closed
5 years ago
1
no LAI report
#21
xinshuaiqi
closed
5 years ago
6
Output gff parameters
#20
xinshuaiqi
closed
5 years ago
2
Support for MGEScan
#19
zengxiaofei
closed
5 years ago
2
Uninitialized value error from get_range.pl
#18
jackson-wells
closed
5 years ago
5
Extract intact Ltrs to fasta
#17
intirules
closed
6 years ago
2
Sequence ID length problem
#16
cslamo
closed
6 years ago
2
Unable to run LTR_retriever
#15
dipsaha
closed
6 years ago
6
ERROR: Fail to convert seq IDs to less than 15 character
#14
intirules
closed
6 years ago
2
Change my GFF3 legacy
#13
intirules
closed
6 years ago
2
Fail to locate the paths file
#12
jam527
closed
6 years ago
14
very large reduction in LTRs when using LTR_retriever
#11
kaylahardwick
closed
6 years ago
3
Error with -nonTGCA option
#10
kaylahardwick
closed
6 years ago
2
how to use a TE library from different accession as input to extract TEs?
#9
bioteksampath
closed
6 years ago
5
Error messages when running on LTR_finder and MGEScan data
#8
TWVKUL
closed
6 years ago
3
Short sequences in LTRlib.fa
#7
sahammond
closed
6 years ago
10
substr outside of string
#6
sahammond
closed
7 years ago
2
Create LICENSE
#5
oushujun
closed
7 years ago
0
Blastn warning: subject sequence contains no data, and final retained clean sequence: 0
#4
rimjhimroy
closed
7 years ago
5
BLAST engine error and uninitialized values
#3
angwg
closed
7 years ago
5
Fatal Error: Failed to open the database file
#2
oushujun
closed
7 years ago
15
LTR_retriever aborts, Illegal character error.
#1
mcsimenc
closed
7 years ago
13
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