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oxpig / ANARCI

Antibody Numbering and Antigen Receptor ClassIfication
BSD 3-Clause "New" or "Revised" License
182 stars 89 forks source link

can not use in win10, need help #55

Closed qiuqingpo closed 1 year ago

qiuqingpo commented 1 year ago

the error is below:

running install C:\Users\qiuqingpo\AppData\Local\Programs\Python\Python310\lib\site-packages\setuptools\command\install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing anarci.egg-info\PKG-INFO writing dependency_links to anarci.egg-info\dependency_links.txt writing top-level names to anarci.egg-info\top_level.txt reading manifest file 'anarci.egg-info\SOURCES.txt' adding license file 'LICENCE' adding license file 'LICENCE_MUSCLE' writing manifest file 'anarci.egg-info\SOURCES.txt' running build_scripts running install_lib running install_data running install_egg_info removing 'C:\Users\qiuqingpo\AppData\Local\Programs\Python\Python310\Lib\site-packages\anarci-1.3-py3.10.egg-info' (and everything under it) Copying anarci.egg-info to C:\Users\qiuqingpo\AppData\Local\Programs\Python\Python310\Lib\site-packages\anarci-1.3-py3.10.egg-info running install_scripts INFO: ANARCI lives in: C:\Users\qiuqingpo\AppData\Local\Programs\Python\Python310\anarci INFO: Downloading germlines from IMGT and building HMMs... INFO: running 'RUN_pipeline.sh', this will take a couple a minutes. ??? Linux ? Windows ????????????? ?????? Microsoft Store ??????: https://aka.ms/wslstore

error: [Errno 2] No such file or directory: 'curated_alignments/germlines.py'

some one who tell me need to install HMMER3 version 3.1 higher, but i see my localhost, my version is v0.2.3, the most important thing is that: i can not install the hmmer 3.1 or higher, please help!

awesome-crab commented 1 year ago

maybe try using it in docker. that would leave you independent of your os.

Generally I think the issue you have is that HMMER is not working on Windows. In order to install HMMER on your windows10 machine, you would have to install WSL2. And then you would be able to install HMMER on WSL2 on your windows10.

Either way you decide you will have to install WSL2. BEcause docker is also relying on WSL...

Hope that helps a little bit.

qiuqingpo commented 1 year ago

thank you very much, it's important for me!