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padlocbio
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padloc
Locate antiviral defence systems in prokaryotic genomes
MIT License
43
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9
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Protein missing
#44
oclaisse
opened
1 month ago
2
Parsing errors
#43
raw937
closed
1 month ago
1
error in 'mutate()'
#42
raw937
opened
1 month ago
1
Use the GA score when available
#41
jpjarnoux
opened
2 months ago
2
Error in mutate()
#40
syuan13
closed
2 months ago
0
Crispr error when running padloc
#39
NK181092
closed
4 months ago
3
database
#38
NK181092
closed
5 months ago
4
Failed to query server: Connection timed out
#37
charlottecc
closed
6 months ago
2
The output is missing
#36
dabaoniu
closed
7 months ago
4
Older `conda` versions install `padloc v1.1.0` rather than `padloc v2.0.0`
#35
leightonpayne
closed
7 months ago
1
Nothing found for GCF_004358345.1 on new conda install of padloc
#34
wsowens
closed
7 months ago
4
Merge padloc.csv files for many genomes
#33
AhmedElsherbini
closed
8 months ago
1
Additional information regarding systems (what is "DSM_other" ?)
#32
UriNeri
closed
8 months ago
2
`--data` must be provided before `--db-update`
#31
ezherman
closed
9 months ago
1
R/library/haven/libs/haven.so: undefined symbol: libiconv Execution halted
#30
Animesh911
closed
1 year ago
1
error: In library (tidyverse): there is no package called 'tidyverse'
#29
francisco-sanhueza
closed
9 months ago
2
error with dependencies
#28
andrenalina1
closed
9 months ago
3
Bit score in output .csv file
#27
scubalaina
closed
1 year ago
4
Multiple matches warning, matching GFF and FAA from prodigal predictions
#26
scubalaina
closed
8 months ago
5
System consistency
#25
jpjarnoux
closed
8 months ago
1
DMS_other
#24
icemduru
closed
1 year ago
2
ERROR >> errexit on line 406
#23
htomelka
closed
1 year ago
1
Solitary genes
#22
Liqueurdefehling
closed
1 year ago
1
Question on `--crispr `
#21
jiarong
closed
1 year ago
1
Update padloc-db
#20
A-Hurk
closed
2 years ago
0
Error in read_tsv(., col_names = c("temp", "target.description"), comment = "#"
#19
htomelka
closed
2 years ago
5
Command not generating output files when looped
#18
emilyjunkins
closed
2 years ago
15
could not find function "cur_group_id"
#17
uuwuyi
closed
2 years ago
1
"ERROR >> errexit on line 386" when running on virus data
#16
boweny920
closed
2 years ago
3
Add description of each column of *_padloc.csv to the README
#15
ezherman
closed
2 years ago
0
Avoid spreading the GFF tibble
#14
apcamargo
closed
2 years ago
2
Add option to fix Prodigal-generated GFF for externally generated GFF files
#13
apcamargo
closed
2 years ago
1
"read_domtbl" hangs when the input GFF file has lines starting with "#"
#12
apcamargo
closed
2 years ago
1
failed when trying to include a new system
#11
alexandergz1983
closed
2 years ago
4
Error when I include a new system
#10
alexandergz1983
closed
2 years ago
0
BREX system
#9
alexandergz1983
closed
2 years ago
0
GFF/FAA matching issue
#8
vihoikka
opened
2 years ago
15
-p meta option is missing
#7
genomesandMGEs
closed
2 years ago
1
Sample bug report
#6
leightonpayne
closed
3 years ago
0