paidiver / paidiverpy

Create pipelines for preprocessing image data for biodiversity analysis.
Apache License 2.0
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Add feature to work with images in the cloud/lazy load #23

Open soutobias opened 2 months ago

soutobias commented 2 months ago

What:

Adding features to work with images in the cloud and implementing lazy loading involve handling image data stored in cloud storage systems efficiently. This means enabling access to images without needing to download all data at once, optimizing performance, and managing large-scale image datasets effectively.

Why:

Cloud storage offers scalability and remote access to large image datasets but can present challenges in terms of data transfer and local storage. Lazy loading and cloud integration techniques help mitigate these issues by enabling on-demand access to images and reducing unnecessary data transfers. This is crucial for maintaining efficient processing workflows and managing resources effectively.

How:

  1. Cloud Storage Access:

    • Using boto3 for AWS S3: The boto3 library allows interaction with AWS S3, enabling efficient access to images stored in the cloud.

      import boto3
      from botocore.exceptions import NoCredentialsError
      
      def download_image_from_s3(bucket_name, image_key, local_file_path):
       s3 = boto3.client('s3')
       try:
           s3.download_file(bucket_name, image_key, local_file_path)
           print(f"Downloaded {image_key} to {local_file_path}")
       except NoCredentialsError:
           print("Credentials not available")
      
      # Example usage
      download_image_from_s3('my-bucket', 'path/to/image.jpg', 'local_image.jpg')
    • Using google-cloud-storage for Google Cloud Storage: For Google Cloud Storage, the google-cloud-storage library provides similar functionality.

      from google.cloud import storage
      
      def download_image_from_gcs(bucket_name, blob_name, local_file_path):
       storage_client = storage.Client()
       bucket = storage_client.bucket(bucket_name)
       blob = bucket.blob(blob_name)
       blob.download_to_filename(local_file_path)
       print(f"Downloaded {blob_name} to {local_file_path}")
      
      # Example usage
      download_image_from_gcs('my-bucket', 'path/to/image.jpg', 'local_image.jpg')
  2. Lazy Loading with Cloud Storage:

    • Using smart_open for Efficient Streaming: The smart_open library supports streaming data from cloud storage, allowing for lazy loading of images.

      import smart_open
      
      def stream_image_from_s3(bucket_name, image_key):
       s3_uri = f"s3://{bucket_name}/{image_key}"
       with smart_open.open(s3_uri, 'rb') as image_file:
           image_data = image_file.read()
           print(f"Read {len(image_data)} bytes from {image_key}")
           return image_data
      
      # Example usage
      image_data = stream_image_from_s3('my-bucket', 'path/to/image.jpg')
    • Using PIL for Lazy Loading and Processing: Combining smart_open with PIL (Pillow) for lazy image processing.

      from PIL import Image
      import io
      
      def load_and_process_image_from_gcs(bucket_name, blob_name):
       from google.cloud import storage
       storage_client = storage.Client()
       bucket = storage_client.bucket(bucket_name)
       blob = bucket.blob(blob_name)
       image_data = blob.download_as_bytes()
       image = Image.open(io.BytesIO(image_data))
       # Process image (e.g., resizing)
       image = image.resize((100, 100))
       image.show()
      
      # Example usage
      load_and_process_image_from_gcs('my-bucket', 'path/to/image.jpg')
  3. Handling Large Image Datasets:

    • Using dask for Parallel Processing: Dask can be used for parallel processing of images in the cloud.

      import dask.dataframe as dd
      
      def process_image_data(file_path):
       # Function to process each image file
       print(f"Processing {file_path}")
       # Actual processing logic here
      
      file_paths = ['s3://my-bucket/path/to/image1.jpg', 's3://my-bucket/path/to/image2.jpg']
      ddf = dd.from_delayed([delayed(process_image_data)(path) for path in file_paths])
      ddf.compute()

What to expect:

What makes it difficult:

Success Metrics:

LoicVA commented 2 months ago

Quick comment, I would recommend one sentence introducing all the methods of access: something like, "Several methods can be employed to access cloud data depending on the server of storage". Otherwise, we are jumping in the 'why' section without much idea where we are going to. This comment applies for any 'why' section of the Github issues.