paninski-lab yass issues

paninski-lab / yass

YASS: Yet Another Spike Sorter

https://github.com/paninski-lab/yass/wiki

Apache License 2.0

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issues

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Installation issue - solution

#348 rtraghavan closed 2 years ago
1
run `yass` without probe

#347 marcoistasy closed 3 years ago
3
Follow Up about cortical data

#346 mishek-thapa opened 3 years ago
0
cortical data

#345 mishek-thapa closed 3 years ago
2
Problem while running the train function

#344 botwithabeard closed 1 year ago
2
Installing on WSL Ubuntu1804

#343 logansdmi closed 3 years ago
2
Issue with master version

#342 alejoe91 closed 3 years ago
5
Install yass on ubuntu 20.4

#341 samuelgarcia closed 1 year ago
8
yass and tensorflow version.

#340 samuelgarcia closed 3 years ago
8
Nocython38

#339 wueric closed 3 years ago
1
trying to build diptest and cuda extension with a single setup.py call

#338 edublancas closed 3 years ago
11
demo notebook?

#337 slinderman closed 3 years ago
1
Yass AMI cannot be found in EC2 on AWS

#336 alinaheukamp closed 3 years ago
2
noise.py: invalid value encountered in true_divide and invalid value encountered in greater dist_in = cover_by_dist > 0.1

#335 alinaheukamp closed 1 year ago
3
yass.phy.run@run takes an absurd amount of memory

#334 DradeAW closed 3 years ago
11
ValueError: could not broadcast input array in postprocess.run@post_process

#333 DradeAW closed 1 year ago
6
Size mismatch for out.weight in loading state_dict for Detect

#332 DradeAW closed 4 years ago
7
installation fails on fresh ubuntu 20.04

#331 grg2rsr closed 3 years ago
4
Clustering doesn't finish on some datasets

#330 wueric closed 3 years ago
2
In the wiki, have more info on yass commands and the config yaml file

#329 jkbhagatio closed 2 years ago
0
"low-pass" and "high-pass" filtering definitions need to be switched

#328 jkbhagatio closed 3 years ago
1
Installation Improvements

#327 calvinytong opened 4 years ago
0
Need description of YASS output for phy2 GUI package.

#326 catubc closed 1 year ago
0
Need better description of YASS output files

#325 catubc opened 4 years ago
0
Some Install Feedback

#324 jkbhagatio opened 4 years ago
1
Weird spike detection at deconv cutoffs

#323 DradeAW closed 4 years ago
5
Assertion Error when opening with phy 2

#322 DradeAW closed 4 years ago
2
Size mismatch for out.weight in pre_final_deconv

#321 DradeAW closed 4 years ago
9
Crash during ptp_split

#320 DradeAW closed 4 years ago
4
detection crashes when no spike detected

#319 jinhyunglee closed 4 years ago
1
crash during final deconv

#318 wueric closed 4 years ago
5
Including pytorch as part of the installation process

#317 edublancas closed 4 years ago
1
Fixing yass version

#316 edublancas closed 4 years ago
1
check deconv difference

#315 kevinli1324 closed 4 years ago
0
Template soft assignment fix

#314 kevinli1324 closed 4 years ago
0
add cuda files

#313 kevinli1324 opened 4 years ago
5
Template soft assignment fix

#312 kevinli1324 closed 4 years ago
0
standardization and batch size shrink

#311 kevinli1324 closed 4 years ago
0
yass.pipeline@pre_final_deconv : size mismatch for out.weight: copying a param with shape torch.Size([1, 56]) from checkpoint, the shape in current model is torch.Size([1, 128]).

#310 llobetv closed 4 years ago
3
Int32 spike time limits

#309 catubc closed 4 years ago
0
fixed spatial covariance calc

#308 kevinli1324 closed 4 years ago
0
YASS 1.0_beta: UnboundLocalError: local variable 'spike_train_new' referenced before assignment

#307 jamesjun closed 4 years ago
0
Added two functions to handle template edges by zero padding.

#306 hooshmandshr closed 4 years ago
0
Template soft assign

#305 kevinli1324 closed 4 years ago
0
Post-deconv merge frequent crash

#304 catubc closed 4 years ago
0
yass convert: IndexError: index 41 is out of bounds for axis 0 with size 10

#303 llobetv closed 4 years ago
1
KeyError: 'height_list is not a file in the archive'

#302 llobetv closed 4 years ago
7
SOFT NOISE ASSIGNMENT: TypeError: subtract_splines(): incompatible function arguments. The following argument types are supported:

#301 llobetv closed 5 years ago
1
FileNotFoundError: [Errno 2] No such file or directory: 'tmp/block_2/deconv/segs/000005.npz'

#300 llobetv closed 5 years ago
2
ptp_split : [](int)->auto::operator()(int)->auto: block: [787,0,0], thread: [65,0,0] Assertion `index >= -sizes[i] && index < sizes[i] && "index out of bounds"` failed.

#299 llobetv closed 5 years ago
2