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panoptes-organization / panoptes

Monitor computational workflows in real time
MIT License
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Duplicated job rows #176

Open fgvieira opened 8 months ago

fgvieira commented 8 months ago

Describe the bug Might be a snakemake bug but, jobs show up as duplicated. While a rule is running, there are two jobs with Status set as Running and no Duration; when it finishes, one of the jobs switches Status to Done and updates the duration.

To Reproduce Steps to reproduce the behavior:

  1. Go to Workflows
  2. Click on any workflow that has finishes jobs

Expected behavior Only one row should be present per job.

Screenshots or logs With one rule still running (and the rest finished): image

With all rules finished: image

Desktop (please complete the following information):

ckrushton commented 2 months ago

I encounter the same issue (running Snakemake 8.11.3), and I think it might be caused by all log messages being duplicated by Snakemake: https://github.com/snakemake/snakemake/issues/2797