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parklab / MosaicForecast

A mosaic detecting software based on phasing and random forest
MIT License
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predictedhap3ormore_cluster.GRCh38.bed not in place #40

Closed dragonf97 closed 7 months ago

dragonf97 commented 7 months ago

Hi,

I'm trying mosaicforecast on my dataset, and while i was setting the basics I found out that something is missing.

Regions enriched for SNVs with >=3 haplotypes (should be removed before calling all kinds of mosaics):

wget https://raw.githubusercontent.com/parklab/MosaicForecast/master/resources/predictedhap3ormore_cluster.GRCh38.bed

The part here is missing. Is there any way i can get that file? or those that file no longer useful?

Thanks, Matt

douym commented 7 months ago

Hi @dragonf97 , Sorry for the confusion. The updated file is here, I merged the hap3 file("clustered") with Segmental Duplicated regions: https://github.com/parklab/MosaicForecast/blob/master/resources/SegDup_and_clustered.GRCh38.bed Hope that helps!

Best wishes,

Yanmei

dragonf97 commented 7 months ago

Thanks for your assist!!