pygorpho

Python bindings for gorpho.

This is a Python library for fast 3D mathematical morphology using CUDA. Currently, the library provides:

• Dilation and erosion for grayscale 3D images.
• Support for flat or grayscale structuring elements.
• A van Herk/Gil-Werman implementation for fast dilation/erosion with flat line segments in 3D.
• Automatic block processing for 3D images which can't fit in GPU memory.

Documentation can be found on https://pygorpho.readthedocs.io

Installation

First, make sure you have CUDA Toolkit 9.2 or later installed. Then, install with pip:

pip install pygorpho

Installing from source

Again, make sure you have CUDA Toolkit 9.2 or later installed. Also, you need a compatible C++ compiler, which supports C++14. Then, following these instructions should allow you to build and install the package:

1. Clone the repo: git clone https://github.com/patmjen/pygorpho.git
2. Change directory: cd pygorpho
3. Install the required Python packages: pip install numpy scikit-build cmake ninja
4. Build and install: python setup.py install

That should be it! To test, run python, and try to import pygorpho as pg.