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paulsengroup
/
hictk
Blazing fast toolkit to work with .hic and .cool files
MIT License
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Improve benchmarks
#312
robomics
opened
3 days ago
1
Improve throughput of float formatting
#311
robomics
closed
3 days ago
1
Address warnings when compiling project with C++23
#310
robomics
opened
1 week ago
1
[feature] make overriding git metadata embedding more flexible
#309
robomics
opened
1 week ago
0
Add missing include
#308
robomics
closed
1 week ago
1
the KR normalization
#305
Nuturetree
closed
1 week ago
1
merge .hic .cool file
#304
Nuturetree
closed
1 week ago
5
Fix typo in the README
#303
robomics
closed
2 weeks ago
0
[docs] improve instructions to build hictk from source on Windows
#302
robomics
opened
2 weeks ago
0
Prepare for release
#301
robomics
closed
2 weeks ago
1
Remove unused workflow
#300
robomics
closed
2 weeks ago
0
Update linkcheck ignore list
#299
robomics
closed
2 weeks ago
0
Implement bins_ptr() accessor for cooler::SingleCellFile()
#298
robomics
closed
2 weeks ago
1
Update linkcheck ignore list
#297
robomics
closed
2 weeks ago
0
Prepare for release
#296
robomics
closed
2 weeks ago
1
Support linking to Arrow::python instead of Arrow::arrow_shared
#295
robomics
closed
2 weeks ago
1
Add option to exclude "ALL" chromosomes when calling nchroms() on .hic files
#294
robomics
closed
2 weeks ago
1
Improve logging when failures occur from within class destructors
#293
robomics
closed
2 weeks ago
1
Mark ~TmpDir() noexcept and log errors as warnings using spdlog
#292
robomics
closed
2 weeks ago
1
Make sure cooler::File::close() does not attempt to finalize files twice
#291
robomics
closed
3 weeks ago
1
Fix to fuzzer suite
#290
robomics
closed
3 weeks ago
2
Bump libarchive
#289
robomics
closed
3 weeks ago
0
Fix ccache cache eviction logic when using GHA job matrix
#288
robomics
closed
3 weeks ago
1
Add macos-15 to CI test matrix
#287
robomics
closed
3 weeks ago
1
Tweak spdlog
#286
robomics
closed
3 weeks ago
1
Replace HICTK_UNREACHABLE_CODE macro with hictk::unreachable_code()
#285
robomics
closed
3 weeks ago
1
Bump clang-tidy used by CI
#284
robomics
closed
3 weeks ago
1
Use gersemi instead of cmake-format to format CMake files
#283
robomics
closed
4 weeks ago
0
Refactor FileStream class
#282
robomics
closed
4 weeks ago
2
Increase integration test base timeout
#281
robomics
closed
4 weeks ago
1
Ensure no temporary files are written when balancing .hic files with --in-memory
#280
robomics
closed
4 weeks ago
1
Fix default log levels when compiling hictk in Debug mode
#279
robomics
closed
1 month ago
1
Tweak max active log level based on CMake build type
#278
robomics
closed
1 month ago
1
Improve performance of ToSparseMatrix by reducing memory allocations
#277
robomics
closed
4 weeks ago
1
Fix visibility warnings issued when compiling hictk_fuzzer using GCC
#276
robomics
closed
1 month ago
0
Refactor FileStream and HiCFileWriter to be more robust against data races
#275
robomics
closed
4 weeks ago
2
Fix temporary file name collisions in hictk convert *cool -> hic
#274
robomics
closed
4 weeks ago
1
Fix Release builds on GCC8
#273
robomics
closed
1 month ago
0
[pre-commit.ci] pre-commit autoupdate
#272
pre-commit-ci[bot]
opened
1 month ago
1
"attempt of out-of-bound read" when using -t option
#271
bskubi
closed
4 weeks ago
8
Update pre-commit config
#270
robomics
closed
1 month ago
1
Add workflows to lint project
#269
robomics
closed
1 month ago
0
Optimize CI workflows
#268
robomics
closed
1 month ago
1
Fix SPDX headers
#267
robomics
closed
1 month ago
0
Make constructors for To*Matrix transformers more flexible
#266
robomics
closed
1 month ago
1
Add missing dep in conanfile.py
#265
robomics
closed
1 month ago
1
hictk load: support ingesting interactions from pairs/pixel files with interactions overlapping with the lower-triangular matrix
#264
robomics
closed
1 month ago
1
Improve coverage
#263
robomics
closed
1 month ago
2
Improve compilation times
#262
robomics
closed
1 month ago
1
[devel] reduce compilation time
#261
robomics
closed
1 month ago
0
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