Constant OMP mean spot - Githubissues

paulshuker / coppafish

COmbinatorial Padlock-Probe-Amplified Fluorescence In Situ Hybridization

https://paulshuker.github.io/coppafish/

MIT License

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Open paulshuker opened 2 days ago

paulshuker commented 2 days ago

Use a constant mean spot specified within a .npy file containing ndarray with dtype float and shape (im_y x im_x x im_z).
There will be a default at coppafish/omp/mean_spot.npy of 3 z planes with diameter of ~5 pixels in x and y.
The user can specify their own mean spot with config parameter mean_spot_filepath.