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pavanvidem
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chira
Chimeric Read Annotator
GNU General Public License v3.0
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could you update "intersectBed" to "bedtools instersect"?
#40
haibol2016
opened
2 months ago
1
GFF file and chira_map.py issue
#39
bdeck01
opened
1 year ago
1
Bug fix: sort spliced alignments set before iterating. Using a set ra…
#38
pavanvidem
closed
4 years ago
0
change to multiplication in interaction summary file too
#37
pavanvidem
closed
4 years ago
0
Change scoring scheme from addition to multiplication. The final comb…
#36
pavanvidem
closed
4 years ago
0
chira_collapse.py
#35
pavanvidem
closed
4 years ago
0
bug fix: 1) print sequences even if there is no hybrid, 2) revert hyb…
#34
pavanvidem
closed
4 years ago
0
Bug fix: In few cases, interaction file had wrong hybrid sequences an…
#33
pavanvidem
closed
4 years ago
0
bug fix: consider cases if sequence is NA
#32
pavanvidem
closed
4 years ago
0
Update output interactions file
#31
pavanvidem
closed
4 years ago
0
update version number
#30
pavanvidem
closed
4 years ago
0
1) Ignore blockbuster clusters. Merge overlapping blocks
#29
pavanvidem
closed
4 years ago
0
1. Ignore blockbuster clusters. Merge overlapping blocks
#28
pavanvidem
closed
4 years ago
0
fix a bug with spliced reads inclusion
#27
pavanvidem
closed
4 years ago
0
Major update
#26
pavanvidem
closed
4 years ago
0
comments and linebreaks
#25
pavanvidem
closed
4 years ago
0
Add .circleci/config.yml
#24
pavanvidem
closed
4 years ago
0
chira_collapse.py: change version
#23
pavanvidem
closed
4 years ago
0
Memory fix
#22
pavanvidem
closed
4 years ago
0
thorough file cleanup
#21
pavanvidem
closed
4 years ago
0
bug fix: The pysam returns reverse complemented sequence for the rea…
#20
pavanvidem
closed
4 years ago
0
fix loci.bed entry, if there is a ':' in reference id
#19
pavanvidem
closed
4 years ago
0
fix a bug that adds double tab in bed writing
#18
pavanvidem
closed
4 years ago
0
Added a new mode of merging using blockbuster
#17
pavanvidem
closed
4 years ago
0
workaround for multiprocessing on NFS. Replaced a shared dict with wr…
#16
pavanvidem
closed
4 years ago
0
fix a bug that resets the length of mature mirna while parsing the GF…
#15
pavanvidem
closed
4 years ago
0
fix a bug in cigars to positions; biopython for reading fasta file;
#14
pavanvidem
closed
4 years ago
0
final outputput: replace cigars with read positions; simplify singlet…
#13
pavanvidem
closed
4 years ago
0
update README
#12
pavanvidem
closed
4 years ago
0
remove galaxy tool
#11
pavanvidem
closed
4 years ago
0
WIP
#10
pavanvidem
closed
4 years ago
0
WIP
#9
pavanvidem
closed
4 years ago
0
remove unused print statements
#8
pavanvidem
closed
4 years ago
0
remove old conda recipe directory
#7
pavanvidem
closed
4 years ago
0
portable shebang
#6
pavanvidem
closed
4 years ago
0
Merge pull request #4 from pavanvidem/master
#5
pavanvidem
closed
4 years ago
0
Merge pull request #3 from pavanvidem/wip
#4
pavanvidem
closed
4 years ago
0
add conda recipe and galaxy wrapper
#3
pavanvidem
closed
4 years ago
0
WIP
#2
pavanvidem
closed
5 years ago
0
add initial files
#1
pavanvidem
closed
5 years ago
0