pcingola SnpSift issues

pcingola / SnpSift

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issues

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WGS Fast memory data-frame based annotations

#91 pcingola closed 1 week ago
0
SnpSift Filter issue

#90 Am3LieC closed 2 months ago
1
Adding matching for deletions that have longer representations

#89 calledit opened 3 months ago
0
Missing usage documentation on gtfilter

#88 IdoBar opened 3 months ago
1
can snpsift rename the INFO/TAG？

#87 litun-fkby opened 7 months ago
0
Adding alphamissense and other annotations from the latest dbNSFP

#86 ramirobarrantes opened 10 months ago
0
fix typo in SnpSiftCmdCaseControl.java

#85 bounlu closed 6 months ago
0
pom.xml: change repository url to https

#84 kbipinkumar opened 1 year ago
0
how to filter based on FREQ?

#83 chunxuan-hs opened 1 year ago
0
extract "ANN[*].RANK" from the ANN field

#82 gcy0115 opened 1 year ago
0
SnpSift split outputs only the first chromosome

#81 kmavrommatis opened 1 year ago
6
Build issue: "SnpSift: Could not resolve dependencies for project"

#80 kbipinkumar closed 1 year ago
1
Bump htsjdk from 2.24.1 to 3.0.1

#79 dependabot[bot] opened 1 year ago
0
CNV error

#78 weichenyangs opened 1 year ago
0
Help with specific filter syntax

#77 ohudson1 closed 1 year ago
0
Filtering variants with a supporting read in the normal sample

#76 yoakiyama opened 2 years ago
0
Unable to pass SnpEff output to SnpSift

#75 rhdolin closed 2 years ago
2
annotate parameters

#74 lmanchon opened 2 years ago
0
How to deal with conflicting INFO field names

#73 rhdolin opened 2 years ago
1
"SnpSift.jar annotate -id" and "SnpSift.jar annotate" have the same results

#72 jiriny opened 2 years ago
0
filter intergenic region structural variants

#71 prasundutta87 opened 2 years ago
0
dbNSFP not annotating entries

#70 ji575 opened 2 years ago
1
INTERVAL header missing

#69 Talya-dor opened 2 years ago
0
Mismatch between LICENSE.md and pom.xml concerning the license

#68 pgrt opened 2 years ago
0
junit scope should be "test" in pom.xml

#67 pgrt opened 2 years ago
0
dbSNP not found

#66 GENEDECODERS opened 2 years ago
0
Update several libraries to fix Log4j vulnerability

#65 pcingola closed 2 years ago
0
Log4j vulnerability

#64 sandra-selfdecode opened 2 years ago
0
SnpSift Extract Fields: GT does not match Allele

#63 saphiecor opened 2 years ago
0
Dashes in variant names

#62 ChadMatsalla opened 3 years ago
0
SnpSift in multiallelic variants

#61 rogeriobioinfo opened 3 years ago
0
Missing 'chr' columns in dbNSFP file

#60 shangyf-stu closed 3 years ago
1
how to download dbSNP142.vcf file?

#59 ghost closed 3 years ago
1
SnpSift CaseControl - statistics clarity

#57 dtlyfoung closed 3 years ago
1
How to escape special characters in SnpSift filter query string?

#56 marcora closed 3 years ago
4
How to read this SNPEff output

#55 SimoneFromThePlantLab closed 3 years ago
0
dbNSFPv4.1a database does not index using tabix

#54 kgandh2 closed 3 years ago
1
line 1:11 no viable alternative at input '[*].GENE:'

#53 AroobAlhumaidy closed 3 years ago
3
Bump junit from 4.4 to 4.13.1

#52 dependabot[bot] closed 2 years ago
1
Interpreting results of java -jar SnpSift.jar concordance

#51 montenegrina closed 3 years ago
2
No white-space, semi-colons, or equals-signs are permitted in INFO field values

#50 rrdavis77 closed 3 years ago
0
Preserving '.' in Float fields in ExtractFields

#49 bingxiao closed 3 years ago
0
annotate INFO allele specifically

#48 lozybean closed 3 years ago
1
Fixed incorrect header number for dbNSFP entries

#47 FelixMoelder opened 5 years ago
0
SnpSift extractFields ANN[0].RANK

#46 zzupmc closed 3 years ago
2
dbNSFP annotation inconsistent and incorrect when caching

#45 yarongolan closed 3 years ago
0
Minor spelling fixes

#44 cbrueffer opened 6 years ago
0
SNPSIFT extractFields

#43 rtemanni closed 3 years ago
2
SnpSift gwasCat added vcf header to the end of the vcf file

#42 hou closed 3 years ago
2
SnpSift vcfCheck broken in v4.3o

#41 nsoranzo closed 7 years ago
1