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pepkit
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looper
A job submitter for Portable Encapsulated Projects
http://looper.databio.org
BSD 2-Clause "Simplified" License
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.looper.yaml should just use a relative path
#267
nsheff
closed
4 years ago
4
If the `.looper` file points to a non-existent file, it gives this error message.
#266
nsheff
closed
4 years ago
4
where should the divvy arg go?
#265
nsheff
closed
4 years ago
2
standardize logmuse
#264
nsheff
closed
1 year ago
1
toggle
#263
nsheff
closed
1 year ago
3
what does --file-checks do
#262
nsheff
closed
4 years ago
12
TypeError: expected str, bytes or os.PathLike object, not NoneType
#261
nsheff
closed
4 years ago
1
command extra functionality
#260
stolarczyk
closed
4 years ago
0
CLI simple args
#259
nsheff
closed
4 years ago
9
divvy variable CLI name
#258
nsheff
closed
4 years ago
0
New approach to pipeline_config.
#257
nsheff
closed
1 year ago
12
New way to handle the old pipeline_args utility
#256
nsheff
closed
4 years ago
1
Split 'summarize'
#255
jpsmith5
closed
4 years ago
0
looper documentation; complete(?) todo list
#254
stolarczyk
closed
4 years ago
25
Ideas for streamlining CLI
#253
nsheff
closed
4 years ago
23
looper destroy error
#252
nsheff
closed
4 years ago
3
`toggle` functionality removed?
#251
jpsmith5
closed
4 years ago
3
Error messaging for missing property is *too* verbose
#250
jpsmith5
closed
4 years ago
1
Clarify that the required `sample_name` attribute cannot include spaces
#249
jpsmith5
closed
4 years ago
1
adjust summarizer to the new pipeline interface format
#248
stolarczyk
closed
4 years ago
0
v1.2.0
#247
stolarczyk
closed
4 years ago
2
looper rerun is running new jobs
#246
nsheff
closed
4 years ago
0
CLI args for compute settings and unknown settings
#245
nsheff
closed
4 years ago
5
pipeline interface specification
#244
nsheff
closed
4 years ago
9
Should protocol_mappings be optional?
#243
nsheff
closed
4 years ago
1
Looper summarizer specification and spin-off
#242
nsheff
closed
8 months ago
4
NameError: name 'read_schema' is not defined
#241
nsheff
closed
4 years ago
2
NameError: name 'project' is not defined
#240
nsheff
closed
4 years ago
1
bug in file size calculation
#239
nsheff
closed
4 years ago
3
looper collate
#238
nsheff
closed
4 years ago
6
How should we define what a pipeline produces?
#237
nsheff
closed
4 years ago
7
revamped resources with job-dependent attributes
#236
nsheff
closed
4 years ago
22
Variable namespaces
#235
nsheff
closed
4 years ago
4
Dividing PEP 2.0 from looper interface revamp
#234
nsheff
closed
4 years ago
3
looper is not populating the bulker crate
#233
nsheff
closed
4 years ago
5
destroy is requiring the old format
#232
nsheff
closed
4 years ago
0
Wildcard protocols is broken on dev
#230
nsheff
closed
4 years ago
0
Recover Mode
#229
franceskoback-Gladstone
closed
4 years ago
1
v0.12.6
#228
stolarczyk
closed
4 years ago
5
migrate to looper on pypi
#227
stolarczyk
closed
4 years ago
1
Can't specify more than one pipeline per protocol
#226
stolarczyk
closed
4 years ago
0
Integrate with eido for project validation
#225
nsheff
closed
4 years ago
0
Add a __main__.py file
#224
nsheff
closed
4 years ago
0
Upgrading the pipeline interface to a template system
#223
nsheff
closed
4 years ago
7
make links on object pages to pdfs
#222
nsheff
closed
4 years ago
0
v0.13
#221
stolarczyk
closed
4 years ago
1
summarizer visualization issues
#220
nsheff
closed
4 years ago
27
Rename 'total elapsed time'
#219
nsheff
closed
4 years ago
2
Inconsistent or non-obvious compute_packages requirement
#218
oddodaoddo
closed
4 years ago
4
summarizer command should be called once per pipeline
#217
nsheff
closed
4 years ago
2
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