peterjc pico_galaxy issues

peterjc / pico_galaxy

Galaxy tools and wrappers for sequence analysis

17 stars 25 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Fix incorrect usage of `sys.exit` in psortb.py

#45 kysrpex closed 2 months ago
1
psortb: incorrect number of arguments passed to `sys.exit`

#44 kysrpex closed 2 months ago
2
Update clinod.xml bio.tools xref

#43 paulzierep closed 5 months ago
1
Update effectiveT3.xml

#42 paulzierep closed 5 months ago
4
Remove deprecated file open mode 'rU'

#41 neoformit closed 8 months ago
5
Replaces TravisCI with GitHub Actions (like IUC)

#40 peterjc opened 9 months ago
0
seq_filter_by_id StopIteration bug

#39 neoformit closed 9 months ago
5
Fixing python2.7 and python3 compatibility issue

#38 Neato-Nick closed 3 years ago
4
rxlr_motifs or rxlr_venn_workflow?

#37 Neato-Nick closed 3 years ago
14
seq_filter_by_mapping 0.0.6 fails on Galaxy 20.09

#36 ynanyam closed 3 years ago
1
coverage_stats fails with Galaxy version 20.01

#35 Takadonet closed 4 years ago
8
Update Mummer to use bioconda

#34 Takadonet closed 5 years ago
10
pure python Venn Diagrams

#33 FredericBGA closed 5 years ago
13
rpy is no longer available / pure python venn_list

#32 FredericBGA closed 5 years ago
3
Supported paired collections in fastq_paired_unpaired

#31 peterjc opened 5 years ago
0
TravisCI - moving linting to separate stage

#30 peterjc closed 6 years ago
1
Update get_orfs_or_cdss on toolshed

#29 abretaud closed 6 years ago
2
Migrate seq_filter_by_id to conda

#28 abretaud closed 6 years ago
7
Wrap DeepSig for signal peptide prediction

#27 peterjc opened 6 years ago
0
Error displaying seq_filter_by_id on main Tool Shed

#26 peterjc opened 6 years ago
0
Update signalp to 4.1

#25 abretaud opened 6 years ago
7
SignalP jobs failing with "error running HOW"

#24 peterjc opened 6 years ago
5
muscle datatype is not available

#23 bgruening closed 7 years ago
3
Enhance coverage_stats to report percentage of references with given coverage

#22 peterjc opened 7 years ago
0
Wrap EffectorP for fungal effector prediction

#21 peterjc opened 7 years ago
0
Check all dependencies available via Conda

#20 peterjc opened 7 years ago
0
Ignore empty column names

#19 lecorguille closed 7 years ago
2
Update rxlr_motifs.xml

#18 lecorguille closed 7 years ago
5
gnuplot error: can't find libpng16.so.16

#17 dwightkuo opened 7 years ago
4
How about the PE reads from sample_seqs.py

#16 yifangt closed 7 years ago
2
seq_filter_by_id skip empty lines

#15 lecorguille closed 8 years ago
4
update coverage_stats to use package_samtools_1_3

#14 peterjc closed 7 years ago
2
GFF3 output for get_orfs_or_cdss

#13 hexylena closed 8 years ago
4
update venn_list to use rpy2 instead of rpy

#12 remimarenco opened 8 years ago
6
venn_list ToolShed installation issue

#11 remimarenco opened 8 years ago
4
add dependency for rpy and limma

#10 bgruening closed 8 years ago
2
EffectiveT3 download links broke, plus new v2.0.1 models

#9 peterjc closed 8 years ago
2
Capture version of Promoter 2, NOD, WoLF PSORT

#8 peterjc closed 7 years ago
5
Implement BED output

#7 hexylena closed 9 years ago
15
add package to tool requirements

#6 bgruening closed 9 years ago
3
Does Galaxy still use suite_config.xml?

#5 peterjc closed 7 years ago
0
samtools bam2fq produces FASTA / FASTQ mixture

#4 peterjc closed 6 years ago
3
MIRA4 tmp directory

#3 nsoranzo closed 10 years ago
7
mira4_assembler should contain a repository_dependencies.xml

#2 nsoranzo closed 10 years ago
1
Fix typo in effectiveT3 caught by API driven test framework.

#1 jmchilton closed 10 years ago
1