pezmaster31 bamtools issues

pezmaster31 / bamtools

C++ API & command-line toolkit for working with BAM data

MIT License

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issues

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BamAlignment read name empty

#189 ghost closed 5 years ago
1
fatal error: api/BamAlignment.h: No such file or directory #include "api/BamAlignment.h"

#188 emmannaemeka closed 3 years ago
7
RefLength of BamMultiReader does not appear to be correct

#187 SebastianHollizeck opened 5 years ago
1
problem compiling bamtools with CMAKE 3.1.4 on Mac OS 10.13.6 (sierra)

#186 wsossin closed 3 years ago
1
bamtools print

#185 simoncawley opened 5 years ago
0
big contig

#184 lw3259111 opened 6 years ago
0
htslib is 10 times faster than bamtools

#183 beaulian opened 6 years ago
0
cannot build on windows (visual studio 2017)

#182 mszhanghm closed 3 years ago
1
Cannot build on windows (mingw32)

#181 mszhanghm closed 3 years ago
1
trying to link on conda

#180 grenaud closed 3 years ago
1
fail to compile bamtools in windows system

#179 xiaowenchenjax closed 3 years ago
1
structure of the include paths.

#178 yifangt closed 3 years ago
0
remove custom ExportHeader function, use install instead

#177 mr-c closed 5 years ago
1
Can't get bamtools ## ERROR 404: Not Found

#176 ashaneev closed 3 years ago
1
does bamtools stats consider supplementary alignment

#175 prasundutta87 opened 6 years ago
0
BgzfStream_p.cpp:(.text+0x1da): undefined reference to

#174 lachlansimpson closed 6 years ago
4
Added a function and constant for checking supplementary BAM alignments.

#173 scchess opened 7 years ago
2
compare two bam files based on read ID

#172 gk7279 closed 3 years ago
0
Sam and JSON conversion B-type tag support and bug fixes

#171 daviesrob closed 3 years ago
4
Support BAMs with >65535 CIGAR operations

#170 lh3 closed 7 years ago
1
Support CIGARs with >65535 operators

#169 lh3 closed 7 years ago
5
Compiling error with the github HEAD

#168 lh3 closed 7 years ago
2
Use FindZLIB.cmake to find zlib dependency

#167 SoapZA closed 7 years ago
0
More fixes

#166 SoapZA closed 7 years ago
0
Format and travis

#165 SoapZA closed 7 years ago
0
Implicit change of EXECUTABLE_OUTPUT_PATH and LIBRARY_OUTPUT_PATH

#164 miepstei closed 7 years ago
4
Remove `(void)` function declarations

#163 SoapZA closed 7 years ago
0
core dumped when converting to BED with unmapped read

#162 khillion opened 7 years ago
0
Use idiomatic CMake VERSION variables

#161 SoapZA closed 7 years ago
0
Fix file issues

#160 SoapZA closed 7 years ago
0
Remove `using namespace std`

#159 SoapZA closed 7 years ago
0
Fix warnings

#158 pb-cdunn closed 7 years ago
0
Fix warnings

#157 SoapZA closed 7 years ago
0
Employ idiomatic CMake option BUILD_SHARED_LIBS for switching library type

#156 SoapZA closed 7 years ago
0
Add pkg-config file for reverse dependencies of BamTools

#155 SoapZA closed 7 years ago
0
Fix outdated bundled jsoncpp

#154 SoapZA closed 7 years ago
0
Fix out-of-source builds

#153 SoapZA closed 7 years ago
0
Modernize CMake

#152 SoapZA closed 7 years ago
0
Fix warning when compiling in C++11 mode due to narrowing conversions

#151 SoapZA closed 7 years ago
0
Fix building with C++11 and above

#150 SoapZA closed 7 years ago
0
CRAM file support

#149 jjfarrell opened 7 years ago
2
BAMTools Compile fails on GCC 7.1.1

#148 apeltzer closed 7 years ago
1
wrong reference length reported on big endian archs

#147 satta opened 7 years ago
0
Tag data extracted improperly

#146 agraubert closed 7 years ago
0
Possible error

#145 kemin711 opened 7 years ago
4
Incorrect bin field set in bam file

#144 jrderuiter opened 7 years ago
0
Checking if the input string while parsing the SAM header is not empty

#143 r78v10a07 opened 7 years ago
1
Adding tag of "Z" using BamAlignment::AddTag

#142 naonaox closed 7 years ago
0
Filter by alignment score [feature request]

#141 sjackman opened 7 years ago
3
src/toolkit/bamtools_resolve.cpp:1049:93: error: no matching function for call to 'make_pair(const string&, ReadGroupResolver)'

#140 mmokrejs closed 7 years ago
2

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