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phac-nml-phrsd
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EPACmodel
Use the Early Pandemic Age-structured Compartmental (EPAC) model
https://phac-nml-phrsd.github.io/EPACmodel/
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pkgdown job takes forever due to lengthy renv restore
#51
papsti
opened
5 days ago
0
support specification of population size by age
#50
papsti
closed
5 days ago
0
EPACmodel::simulate() doesn't seem affected by specification of values$contact.pars
#49
papsti
closed
5 days ago
1
enable the creation of Mistry contact matrices with new population data
#48
papsti
closed
5 days ago
1
update documentation of `hosp` model
#47
papsti
opened
2 months ago
2
check on params frame initialization for `flow`
#46
papsti
opened
2 months ago
2
update model values after simulator is built
#45
papsti
closed
2 months ago
0
add parameterization of each flow rate to `hosp` vignette
#44
papsti
opened
2 months ago
0
enable passing of precomputed `flow` vec within `values` to simulator
#43
papsti
closed
2 months ago
0
update param values after simulator is built when `scenario.name = "change-contacts"`
#42
papsti
closed
2 months ago
0
suppress messages from reading in contact matrix data
#41
papsti
opened
4 months ago
0
update model values without having to re-build simulator
#40
papsti
closed
2 months ago
1
new `hosp` model with more detailed hospital processes
#39
papsti
closed
4 months ago
0
hosp model can now generate simulations
#38
stevencarlislewalker
closed
4 months ago
0
redo `hosp` diagram in draw.io
#37
papsti
closed
2 months ago
1
Parametrize flows
#36
papsti
closed
4 months ago
0
parameterize `five_year_age_groups` model with commonly measured epi quantities
#35
papsti
closed
4 months ago
1
add more detailed hospital modelling
#34
papsti
closed
4 months ago
1
Suggests -> Imports for some pkgs
#33
papsti
opened
1 year ago
0
Fix `simulate()` bug
#32
papsti
closed
1 year ago
0
check test coverage and increase to 100%
#31
papsti
opened
1 year ago
0
`simulate()` not returning anything
#30
papsti
closed
1 year ago
2
`simulate9
#29
papsti
closed
1 year ago
1
update Matrix version
#28
papsti
opened
1 year ago
0
first version of the package site
#27
papsti
closed
1 year ago
0
add orcids to pkg site
#26
papsti
opened
1 year ago
0
set up pkg site
#25
papsti
closed
1 year ago
2
add documentation about locally-defined models
#24
papsti
closed
1 year ago
0
support local model definitions
#23
papsti
closed
1 year ago
0
NA should be used for missing matrix elements
#22
stevencarlislewalker
closed
1 year ago
1
add support for local model definitions
#21
papsti
closed
1 year ago
1
function to show model-specific README
#20
papsti
opened
1 year ago
0
improve population size data
#19
papsti
opened
1 year ago
1
Document models
#18
papsti
closed
1 year ago
0
why is renamed `young-old` model not getting installed?
#17
papsti
closed
1 year ago
0
further work on adding five-year-age-groups model
#16
papsti
closed
1 year ago
0
migrate repo to @phac-nml-phrsd org
#15
papsti
closed
1 year ago
0
document input values, outputs, and scenarios for each model
#14
papsti
closed
1 year ago
0
complete README for five-year-age-groups model
#13
papsti
closed
1 year ago
0
implement scenario option on top of base models
#12
papsti
closed
1 year ago
0
first implementation of five-year age groups model
#11
papsti
closed
1 year ago
0
pass named list of values for any expression requiring a value to initialize a model simulator
#10
papsti
closed
1 year ago
0
add new model iteration with five year age groups
#9
papsti
closed
1 year ago
2
can't find package functions after reinstalling via `devtools::install()`
#8
papsti
closed
1 year ago
1
pick some default contact matrices for the canadian population
#7
papsti
closed
1 year ago
0
expand age structure beyond two age groups
#6
papsti
closed
1 year ago
0
incorporate model with interventions
#5
papsti
closed
1 year ago
0
first pass at including model documentation
#4
papsti
closed
1 year ago
1
add article about each model explaining structure, etc
#3
papsti
closed
1 year ago
0
get interventions into the model
#2
papsti
closed
1 year ago
0
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