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phac-nml
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irida-staramr-results
Enables StarAMR analysis results that were run through IRIDA to be downloaded into a spreadsheet using the command line.
Apache License 2.0
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results not including all Analysis for all hours of a specified start/end date
#35
JeffreyThiessen
opened
2 years ago
1
Fixed conda build issue and added installation instructions
#34
JeffreyThiessen
closed
2 years ago
0
fixed pointfinder not being added to output
#33
JeffreyThiessen
closed
2 years ago
0
Progress bar
#32
mariellemanlulu
closed
3 years ago
0
Merge Development to Main
#31
mariellemanlulu
closed
3 years ago
0
Update Setup.py
#30
mariellemanlulu
closed
3 years ago
1
Update setup.py
#29
mariellemanlulu
closed
3 years ago
0
Progress Bar
#28
mariellemanlulu
closed
3 years ago
0
Less api calls
#27
mariellemanlulu
closed
3 years ago
0
Logging and small changes
#26
mariellemanlulu
closed
3 years ago
0
Docs
#25
mariellemanlulu
closed
3 years ago
0
Refactor and other changes
#24
mariellemanlulu
closed
3 years ago
0
Date range filter
#23
mariellemanlulu
closed
3 years ago
0
Renamed output files as the created date of the Analysis run
#22
mariellemanlulu
closed
3 years ago
2
added argument -a to append all found analysis into a single file.
#21
JeffreyThiessen
closed
3 years ago
0
Unit test for irida_api.py
#20
mariellemanlulu
closed
3 years ago
0
Filter analysis that get output by date
#19
JeffreyThiessen
closed
3 years ago
2
Output files should be named according to the datetime of when the analysis was run
#18
JeffreyThiessen
closed
3 years ago
0
Add output files to directory based on project.
#17
JeffreyThiessen
opened
3 years ago
0
Fix formatting of Settings sheet. Add logging messages
#16
mariellemanlulu
closed
3 years ago
0
Remove extra column that contains the row index.
#15
mariellemanlulu
closed
3 years ago
1
Write results to an excel file #4
#14
mariellemanlulu
closed
3 years ago
1
Refactor irida_api so that functions takes project_id.
#13
mariellemanlulu
closed
3 years ago
0
User Configuration
#12
mariellemanlulu
closed
3 years ago
0
Make API calls consistent with iridauploader's functions
#11
mariellemanlulu
closed
3 years ago
0
Fix ModuleNotFound error
#10
mariellemanlulu
closed
3 years ago
0
Added _get_link function and filter only amr detection analysis
#9
mariellemanlulu
closed
3 years ago
0
Main entry point #1
#8
mariellemanlulu
closed
3 years ago
0
Base script
#7
mariellemanlulu
closed
3 years ago
0
Add end to end test
#6
JeffreyThiessen
opened
3 years ago
0
Add Unit Tests
#5
JeffreyThiessen
opened
3 years ago
0
Generate the excel file
#4
JeffreyThiessen
closed
3 years ago
0
User configuration
#3
JeffreyThiessen
closed
3 years ago
1
Filter analysis list to only return StarAMR analysis
#2
JeffreyThiessen
closed
3 years ago
0
Create main entry point function
#1
JeffreyThiessen
closed
3 years ago
0