phac-nml staramrnf issues

phac-nml / staramrnf

nf-core StarAMR

MIT License

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Minor Release: 0.2.0

#29 sgsutcliffe closed 1 month ago
0
Update: Include `sample_name` IRIDA-Next input column

#28 sgsutcliffe closed 1 month ago
2
Resolves #26 Modify output files with `staramr`

#27 sgsutcliffe closed 2 months ago
0
Modify StarAMR outputfiles with `staramr` extension

#26 sgsutcliffe closed 2 months ago
0
Added two additional metadata tags and nf-test asserts

#25 sgsutcliffe closed 2 months ago
0
Look into if we need to rename number of contigs field in metadata

#24 apetkau opened 2 months ago
0
0.1.0 Release

#23 sgsutcliffe closed 2 months ago
0
Resolves #17 Add "StarAMR" prefix to each metadata field

#22 sgsutcliffe closed 2 months ago
0
Fixes #18: "schema_input.json" does not accept uncompressed contigs

#21 sgsutcliffe closed 2 months ago
3
Updated docs for release

#20 sgsutcliffe closed 2 months ago
4
Add dynamic settings based on `species` input

#19 sgsutcliffe opened 2 months ago
0
`schema_input.json` does not accept uncompressed `contigs`

#18 sgsutcliffe closed 2 months ago
3
Add "StarAMR" prefix to each metadata field

#17 apetkau closed 2 months ago
1
Refactoring: Collapse repeated code into function

#16 sgsutcliffe closed 2 months ago
0
Modify input parameters to integrate with IRIDA-Next UI

#15 sgsutcliffe closed 2 months ago
5
Concatenate output files

#14 sgsutcliffe closed 3 months ago
2
Fix samplesheet url

#13 sgsutcliffe closed 4 months ago
1
Adds nf-test for IRIDA Next JSON output

#12 sgsutcliffe closed 4 months ago
2
Metadata irida output

#11 sgsutcliffe closed 4 months ago
1
Added IRIDA Next JSON output file

#10 sgsutcliffe closed 4 months ago
0
Remove nf core branding

#9 sgsutcliffe closed 4 months ago
0
Setup nf-test CI for pull-requests

#8 sgsutcliffe closed 4 months ago
0
Fix CI linting

#7 sgsutcliffe closed 4 months ago
1
Add other needed files for tests

#6 apetkau closed 5 months ago
0
Added test data

#5 apetkau closed 5 months ago
0
Updated ci/actions files

#4 apetkau closed 5 months ago
0
Adding test data

#3 apetkau closed 5 months ago
0
Added test data

#2 apetkau closed 5 months ago
0
doc links are broken

#1 splaisan closed 2 months ago
2