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phenopackets
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phenopacket-format
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GSoC 2016 @ ga4gh.org
#47
rohangoel96
closed
8 years ago
1
phesub-model.md file mentioned everywhere doesn't exist
#46
rohangoel96
closed
8 years ago
0
variant
#45
pnrobinson
opened
8 years ago
1
DO NOT MERGE YET, first pass at json schema
#44
cmungall
closed
8 years ago
2
Document strategy for implementation in APIs
#43
cmungall
opened
8 years ago
0
Automate generation of documentation from schema
#42
cmungall
opened
8 years ago
0
Add JSON-Schema validator to travis
#41
cmungall
opened
8 years ago
3
Add a JSON-LD context file
#40
cmungall
opened
8 years ago
15
relationship to json:API
#39
mjy
closed
8 years ago
2
In BioLark, enable user to configure ontologies used for mining
#38
jmcmurry
opened
8 years ago
2
In BioLark, allow user to relax precision stringency
#37
jmcmurry
closed
8 years ago
1
In BioLark output, include frequency of mined terms
#36
jmcmurry
opened
8 years ago
0
Make phenopacket examples for model organism
#35
mellybelly
opened
8 years ago
2
Further refine evidence references
#34
mellybelly
closed
8 years ago
1
Specify allowable age/DOB values
#33
mellybelly
opened
8 years ago
3
Confusion regarding entity versus admin profile declarations
#32
mellybelly
opened
8 years ago
1
Use JSON-schema instead of kwalify
#31
cmungall
closed
8 years ago
2
Update journal-example2-l1.yaml
#30
jmcmurry
closed
8 years ago
0
Investigate versioning of phenopacket instances due to evolution in representation and disease progression
#29
jmcmurry
opened
8 years ago
0
Create journal-example2-l1.yaml
#28
jmcmurry
closed
8 years ago
9
Update requirements.md
#27
jmcmurry
closed
8 years ago
1
Investigate approaches to patient identification
#26
jmcmurry
opened
8 years ago
4
revise negation
#25
harryhoch
closed
8 years ago
6
Should YAML subset be restricted to what is expressible in JSON (meaning exclude the ability to use references)
#24
cmungall
opened
8 years ago
3
investigate possibility for a global IRI scheme for uniquely identifying a variant
#23
cmungall
opened
8 years ago
1
Document mechanism for referencing entities within and across documents
#22
cmungall
opened
8 years ago
0
Suggestion for output format
#21
pnrobinson
opened
8 years ago
2
negation
#20
harryhoch
opened
8 years ago
0
added journal-example to makefile
#19
harryhoch
closed
8 years ago
0
sample journal file
#18
harryhoch
closed
8 years ago
0
Traceable author statements that are referred to in other papers
#17
jmcmurry
opened
8 years ago
0
Modifiers
#16
pnrobinson
opened
8 years ago
1
need association types
#15
mellybelly
opened
8 years ago
0
Define ontology to be used for encoding relationships from PED files
#14
cmungall
opened
8 years ago
3
refactoring for assoc model
#13
cmungall
closed
8 years ago
1
consider VCF format specification
#12
mellybelly
opened
8 years ago
2
example for VCF files
#11
mellybelly
opened
8 years ago
2
Variant representation
#10
pnrobinson
opened
8 years ago
11
add table to paper that discusses need for genotype standardization
#9
mellybelly
opened
8 years ago
0
Update requirements.md
#8
mellybelly
closed
8 years ago
0
tool + PED
#7
drseb
opened
8 years ago
0
make data available outside paywall
#6
mellybelly
opened
8 years ago
3
age
#5
harryhoch
closed
8 years ago
0
temporal onset
#4
harryhoch
opened
8 years ago
2
negation
#3
harryhoch
opened
8 years ago
1
treatment histories
#2
harryhoch
opened
8 years ago
2
consider scope.
#1
harryhoch
opened
8 years ago
3
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