philippdre omniCLIP issues

philippdre / omniCLIP

omniCLIP is a CLIP-Seq peak caller

GNU General Public License v3.0

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issues

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Background RNA-seq files: PAR-CLIP experiments do not include background controls and lack background RNA-seq files

#31 santataRU opened 3 months ago
0
Make the output dir before run the run_omniCLIP

#30 Ruitulyu opened 1 year ago
0
One issue that require your attention.

#29 Ruitulyu opened 1 year ago
0
verifying_args is not defined

#28 kmcoyle opened 3 years ago
1
several bugs in run_omniCLIP

#27 vagarwal87 opened 3 years ago
0
installation failure

#26 stasaki opened 3 years ago
3
TypeError: 'numpy.float64' object cannot be interpreted as an integer

#25 peaceben opened 3 years ago
3
PR - User interface and code refactoring

#24 simojoe closed 3 years ago
0
non-overlapping peak calls (enhancement)

#23 slebedeva opened 3 years ago
0
make "thick" position in pred.bed the one with the most diagnostic events

#22 slebedeva opened 3 years ago
0
Closed h5py handles - FitEmissionParameters

#21 simojoe opened 4 years ago
0
Unable to compile (even with version controlled conda py37 environment)

#20 iamnicogomez opened 4 years ago
2
Cast n_iter to int since it can be numpy.float64

#19 ejeanvoi closed 3 years ago
0
fix #17 - parsing for _PAR_Y

#18 simojoe closed 4 years ago
0
ValueError: list.remove(x): x not in list

#17 CharlotteAnne closed 4 years ago
1
Removing genes without CLIP coverage - minimum peak height

#16 simojoe opened 4 years ago
3
RuntimeWarning: divide by zero encountered in log

#15 CharlotteAnne closed 4 years ago
1
error in mask_miRNA_positions - removing faulty if statement

#14 simojoe closed 3 years ago
2
Changing context to spawn for multiprocessing Pool (bis)

#13 simojoe closed 4 years ago
0
Changing context to spawn for multiprocessing Pool

#12 simojoe closed 4 years ago
1
--bg-type option

#11 simojoe opened 4 years ago
0
Data format consistencies

#10 timlai4 closed 4 years ago
0
h5py multiprocessing issue

#9 timlai4 closed 4 years ago
2
Error reading IterSaveFile.dat

#8 timlai4 closed 4 years ago
0
scipy.misc.logsumexp is deprecated

#7 simojoe closed 4 years ago
0
different strand for CLIP and input

#6 slebedeva closed 4 years ago
0
gene = Sequences.keys()[0] IndexError: list index out of range

#5 CharlotteAnne closed 4 years ago
2
LoadReads

#4 amitblum closed 4 years ago
2
numpy error on test data

#3 fgypas closed 4 years ago
6
Description of output files

#2 khembach opened 5 years ago
5
random not imported

#1 jmerkin closed 6 years ago
1