phyloref clade-ontology issues

phyloref / clade-ontology

Ontology of Phylogenetic Clade Definitions

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Update regnum2phyx script to generate Phyx v1.0.1 instead of Phyx v0.2.0

#95 gaurav opened 1 year ago
0
Bump moment from 2.26.0 to 2.29.4

#94 dependabot[bot] opened 2 years ago
0
Bump moment from 2.26.0 to 2.29.2

#93 dependabot[bot] closed 2 years ago
1
Bump ajv from 6.10.0 to 6.12.3

#92 dependabot[bot] opened 2 years ago
0
Bump pathval from 1.1.0 to 1.1.1

#91 dependabot[bot] opened 2 years ago
0
Bump path-parse from 1.0.6 to 1.0.7

#90 dependabot[bot] opened 3 years ago
0
Clean up Regnum phylorefs

#89 gaurav opened 3 years ago
1
Bump hosted-git-info from 2.7.1 to 2.8.9

#88 dependabot[bot] opened 3 years ago
0
Bump lodash from 4.17.11 to 4.17.21

#87 dependabot[bot] opened 3 years ago
0
Bump y18n from 4.0.0 to 4.0.1

#86 dependabot[bot] opened 3 years ago
0
Figure out whether to include non-Phylonym clade definitions in CLADO

#85 gaurav opened 3 years ago
0
Obtain updated definition citations from Regnum

#84 gaurav opened 3 years ago
0
Bump yargs-parser from 13.0.0 to 13.1.2

#83 dependabot[bot] opened 4 years ago
0
Unencrypt Phylonym files

#82 gaurav opened 4 years ago
0
Fix definition sources in Phylonym

#81 gaurav opened 4 years ago
0
Fix specifier authorities and other bugs in Regnum to Phyx generation

#80 gaurav opened 4 years ago
0
Add support for testing against the Open Tree of Life

#79 gaurav opened 4 years ago
0
Import transcribed phylogenies

#78 gaurav opened 4 years ago
0
Bump lodash from 4.17.11 to 4.17.19

#77 dependabot[bot] closed 3 years ago
1
Bump eslint-utils from 1.3.1 to 1.4.3

#76 dependabot[bot] opened 4 years ago
0
Bump lodash from 4.17.11 to 4.17.13

#75 dependabot[bot] closed 4 years ago
1
Incorporate Phyx files from Regnum into the Clade Ontology repository

#74 gaurav closed 4 years ago
0
Phyxtract

#73 gaurav opened 4 years ago
0
Add comparisons with Open Tree of Life resolution

#72 gaurav opened 4 years ago
0
Add unit tests for regnum2phyx

#71 gaurav opened 4 years ago
0
Improve phyx2ontology testing

#70 gaurav closed 5 years ago
0
Update citation format to CSL-JSON

#69 gaurav opened 5 years ago
0
Add support for resolving to trichotomies in model 2.0 ontologies

#68 gaurav opened 5 years ago
0
phyx2ontology.js is missing some equivalentClass statements

#67 gaurav opened 5 years ago
1
Converted some `@type`s into `rdf:type` entries.

#66 gaurav opened 5 years ago
0
Add shape-based testing to the Clade Ontology

#65 gaurav opened 5 years ago
1
Implement citations for phyloreferences in the Clade Ontology

#64 gaurav opened 5 years ago
0
Create regnum2phyx script to convert Regnum database dumps to Phyx files

#63 gaurav closed 5 years ago
0
Should the Clade Ontology record specifiers outside of the equivalentClass expression?

#62 gaurav opened 5 years ago
0
Determine how to represent specimens as OWL restrictions

#61 gaurav opened 5 years ago
4
Added ESLint to standardize formatting

#60 gaurav closed 5 years ago
0
Updated @context as per phyloref/phyx.js#3

#59 gaurav closed 5 years ago
0
Adds a phyx2ontology.js script for building a synthesized Clade Ontology

#58 gaurav closed 5 years ago
3
Replaced curation-tool with @phyloref/phyx as an NPM package

#57 gaurav closed 5 years ago
0
Fix broken functionality via URI changes and submodule updates

#56 gaurav closed 5 years ago
0
Figure out why some phyloreferences don't resolve correctly in JFact

#55 gaurav opened 5 years ago
0
Write out phyloreference details during testing

#54 gaurav opened 5 years ago
0
Replace Phyloref Ontology with its version URI

#53 gaurav opened 5 years ago
0
Delete phyx2owl script from Clade Ontology

#52 gaurav closed 5 years ago
5
Delete phyx2owl from this repository

#51 gaurav closed 5 years ago
0
Add the Clade Ontology as a submodule

#50 gaurav closed 5 years ago
0
Standardized and fixed PHYX files from papers

#49 gaurav closed 5 years ago
0
Add script to synthesize a single combined ontology containing all phyloreferences

#48 gaurav closed 5 years ago
1
Replaced Python test suite with Node.js test suite

#47 gaurav closed 5 years ago
2
Information in Regnum that should be included in the Clade Ontology

#46 gaurav opened 6 years ago
0