ds-experiments

These are data sets from Lakner et al 2008 as well as some scripts to run variational analyses.

Run analyses with

python libsbn-scripts/benchmark_sbn_gradients.py .

This script requires MrBayes runs to execute. Because these files are big, they are not included in the repository.

To generate the MrBayes runs, install MrBayes (available on Debian/Ubuntu via apt-get) and execute

mb *.mb

in the data set corresponding to the analysis of interest to you. The _fixed versions of the analyses have a fixed tree.