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physiopy
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phys2bids
Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!
https://phys2bids.readthedocs.io
Apache License 2.0
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Request: a dataset with sample phys recording, MRI data (DICOMs), and ideally trigger pulses (in phys recording timing)
#473
yarikoptic
opened
1 month ago
0
Update .zenodo.json for Rachael
#472
RayStick
opened
1 month ago
1
add RayStick as a contributor for infra
#471
allcontributors[bot]
opened
1 month ago
0
add RayStick as a contributor for tool
#470
allcontributors[bot]
closed
1 month ago
0
Fix pydocstyle usage in setup.cfg
#469
maestroque
closed
4 months ago
1
test auto
#468
RayStick
closed
5 months ago
0
testing auto-assign
#467
RayStick
closed
5 months ago
0
Add auto-author and auto-label to github workflow
#466
RayStick
closed
5 months ago
10
Implement auto-author-assign and auto-label workflows
#465
RayStick
closed
5 months ago
0
Generate graphic reports for phys2bids outputs
#464
me-pic
opened
5 months ago
6
Correct typos and formatting in README
#463
RayStick
closed
5 months ago
2
[pre-commit.ci] pre-commit autoupdate
#462
pre-commit-ci[bot]
opened
9 months ago
2
Implement Loguru for better logging
#461
smoia
opened
11 months ago
0
[pre-commit.ci] pre-commit autoupdate
#460
pre-commit-ci[bot]
closed
9 months ago
1
Fix readthedocs and update configuration
#459
smoia
closed
11 months ago
0
Read hdf5 files generated by bioread
#458
oesteban
opened
1 year ago
1
Add more information in `--info` report
#457
smoia
opened
1 year ago
0
DRG tests for raw text input
#456
afni-dglen
opened
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#455
pre-commit-ci[bot]
closed
11 months ago
1
Update supported file list
#454
smoia
closed
1 year ago
1
Update @sangfrois as a contributor
#453
smoia
closed
1 year ago
0
Update contributions
#452
smoia
closed
1 year ago
0
Update .circleci/config.yml to use store_test_results
#451
CircleCI-config-suggestions-bot
closed
1 year ago
0
Update contributions
#450
smoia
closed
1 year ago
0
Update documentation with newer filetype supported and their installation
#449
smoia
opened
1 year ago
0
Improve performance by using numpy for trigger detection and closing matplotlib figures to avoid memleaks.
#448
bpinsard
closed
1 year ago
5
Axis out of bounds when reading trigger
#447
oesteban
opened
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#446
pre-commit-ci[bot]
closed
1 year ago
0
Fix pre-commit configuration
#445
smoia
closed
1 year ago
0
Remove wrong version of exclusion strings
#444
smoia
closed
1 year ago
1
Update documentation to include GE file functionality
#443
nw-duncan
closed
1 year ago
5
Read only the channels declared by the user rather than processing all the file.
#442
smoia
opened
1 year ago
0
Provide number of timepoints when displayign information
#441
smoia
opened
1 year ago
0
Fix channel trigger variable type when the trigger is automatically detected
#440
smoia
closed
1 year ago
2
Fix channel selection to not remove "time channel"
#439
smoia
closed
1 year ago
2
How compares to mriphysio ?
#438
yarikoptic
opened
1 year ago
3
selecting channels results in incorrect json
#437
sdwilli123
closed
1 year ago
5
Codespell the code, add configuration and workflow for it so no typo sneaks in
#436
yarikoptic
closed
1 year ago
4
split physio signals into runs with a GUI
#435
mixue-t
opened
1 year ago
0
Update code to support numpy >= 1.24
#434
smoia
opened
1 year ago
0
Fix trigger index update on channel subset selection (`-chsel`)
#433
smoia
closed
1 year ago
3
Fix txt reading and improve performance
#432
smoia
closed
1 year ago
2
phys2bids hanging (or taking more than 2 days to parse 1 file?)
#431
dangom
closed
1 year ago
12
Switch CI to CircleCI, drop Windows testing
#430
smoia
closed
1 year ago
1
Fix documentation indexing
#429
smoia
closed
2 years ago
1
Fix API documentation removing deprecated `interfaces` and adding `io`.
#428
smoia
closed
2 years ago
1
Rename "run" into "take" for clearer purposes and fix naming convention in multi-take overlapping
#427
smoia
closed
2 years ago
1
Fix trigger plots when trigger has different sampling than time
#426
smoia
closed
2 years ago
1
Prevent slicing from terminating program if end of last slice is above maximum timepoints.
#425
smoia
closed
2 years ago
1
Add GE scanner physiological file functionality
#424
nw-duncan
closed
1 year ago
5
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