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picrust
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picrust2
Code, unit tests, and tutorials for running PICRUSt2
GNU General Public License v3.0
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Categorization like PICRUST1 - using R
#362
EJS01
closed
4 days ago
1
KEGG/EC Database Question
#361
raeshrode
closed
1 week ago
3
sepp.scheduler.JobError
#360
jxi001
closed
1 week ago
11
Getting error
#359
Sam131992
opened
2 weeks ago
1
Problems with Rcpp and castor
#358
rusty-russ
closed
3 weeks ago
1
Request to Add New Genome
#357
Takuto-JP
closed
3 weeks ago
1
there is no package called ‘castor’
#356
Kuehn-Lab
closed
4 weeks ago
4
Error : Stopping - no ASV ids overlap between input FASTA and sequence abundance table
#355
ConstanceBtd
closed
1 month ago
3
tree file after place_seqs.py is not generated
#354
TeeratatK
closed
1 month ago
6
Subset of Reference 16s sequences aligned poorly to reference sequences
#353
Abelcanc3rhack3r
closed
4 days ago
3
V2.5.3
#352
gavinmdouglas
closed
1 month ago
0
ERROR collecting picrust2-2.5.2/tests/test_hsp.py
#351
UeenHuynh
closed
1 month ago
1
Running picrust on full geomes
#350
annotatebio
closed
3 months ago
3
Please help for picrust2 tutorial: cannot download the data set
#349
paiboon-aut
closed
5 months ago
4
complex definition effect on abundance calculation
#348
danpal96
closed
2 months ago
1
During pytest place_seqs.py fails and cannot run the full pipeline
#347
rassanjorjo
closed
2 months ago
6
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte
#346
abelTan131
closed
6 months ago
3
Gene family abundances per ASV rather than per sample
#345
antonkratz
closed
6 months ago
1
PICRTUST 2 No such file or directory: 'hmmalign'
#344
kesava31
closed
6 months ago
2
Assign general function from KEGG pathway in pathways_out
#343
Dirrrrty
closed
6 months ago
1
Macbook M1 chip pytest error (sqlite3 import??)
#342
SinaedaA
closed
2 months ago
2
pytest fails 1 test on test_place_seqs.py
#341
mavino
closed
6 months ago
2
Absolute abundance data for picrust2
#340
sankadinesh
closed
2 months ago
3
Error runnig picrust due to cannot import name '_convert_node_to_root_polytomy'
#339
Zathzk
closed
2 months ago
2
Running picrust on shotgun output from bracken
#338
hkaspersen
closed
6 months ago
2
metagenome contributions analysis
#337
gonzalofe
closed
6 months ago
2
running picrust2 on ITS
#336
ScarlettPegany
closed
6 months ago
2
Customize database guidance
#335
dcm9123
closed
2 months ago
4
Question about previous filtering of otu table
#334
gonzalofe
closed
6 months ago
3
maximum recursion depth exceeded while calling a Python object
#333
pangao1990
closed
10 months ago
0
help please : Error running picrust2_pipeline.py
#332
saassli21
closed
6 months ago
2
Installing problem into MacBook Air m1 terminal
#331
kumarrupin
closed
2 months ago
9
tests/test_place_seqs.py shows failed status upon running the 'pytest' command
#330
chrissy005
closed
6 months ago
3
Is not like an issue but more like an aha moment
#329
lcamVz
closed
6 months ago
3
picrust2_outputs
#328
WillErickson1
closed
6 months ago
2
picrust2 installation
#327
WillErickson1
closed
6 months ago
3
PicRust2 Error : number of statistically significant pathways exceeds the database's query limit.
#326
sm-arosh
closed
6 months ago
5
Error in Picrust2_pipeline.py
#325
Mirabelle0116
closed
6 months ago
2
clarification on path_abun_contrib - contributory bacteria to metabolic profile
#324
EJS01
closed
1 year ago
1
metagenome_pipeline.py - flag to reduce amount of memory used
#323
RachBioHaz
closed
6 months ago
2
Issue with using picrust2 pipeline for ITS sequences
#322
dixi06
closed
6 months ago
2
Does PiCrust2 generate 16S taxonomic classifications using your reference tree?
#321
carmennns2
closed
6 months ago
3
Error with hsp.py step with tutorial data
#320
sjackrel
closed
1 year ago
3
Analyzing Oxford Nanopore 16s data with Picrust2
#319
AhmedAboushanab
closed
6 months ago
2
3,751 input sequences aligned poorly to reference sequences and removed.
#318
hereformore
closed
6 months ago
2
de-novo clustered ASVs as input sequences in picrust2
#317
scmicrosys
closed
6 months ago
2
how long should full pipeline command run?
#316
mayagabitzsch
closed
6 months ago
2
Error of running picrust2_pipeline
#315
Gahyeon-Baek
closed
2 months ago
5
biom-format not found
#314
Nazzy87
closed
6 months ago
4
How to use a custom KEGG database?
#313
BenWu1224
closed
6 months ago
1
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