picrust picrust2 issues

picrust / picrust2

Code, unit tests, and tutorials for running PICRUSt2

GNU General Public License v3.0

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issues

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Pathway relative abundance

#367 carbon14bond opened 8 hours ago
0
Inferring EC numbers corresponding to post-2018 update

#366 michaelwasney closed 2 weeks ago
1
How to estimate library size?

#365 krcurtis closed 2 weeks ago
1
Installation problems v2.5.3

#364 teann-m closed 4 weeks ago
1
Error in matrix(0, nrow = Nclades, ncol = Nstates - common_state) : invalid 'ncol' value (too large or NA)

#363 Abelcanc3rhack3r closed 4 weeks ago
1
Categorization like PICRUST1 - using R

#362 EJS01 closed 1 month ago
1
KEGG/EC Database Question

#361 raeshrode closed 2 months ago
3
sepp.scheduler.JobError

#360 jxi001 closed 2 months ago
11
Getting error

#359 Sam131992 closed 4 weeks ago
2
Problems with Rcpp and castor

#358 rusty-russ closed 2 months ago
1
Request to Add New Genome

#357 Takuto-JP closed 2 months ago
1
there is no package called ‘castor’

#356 Kuehn-Lab closed 2 months ago
4
Error : Stopping - no ASV ids overlap between input FASTA and sequence abundance table

#355 ConstanceBtd closed 2 months ago
3
tree file after place_seqs.py is not generated

#354 TeeratatK closed 2 months ago
6
Subset of Reference 16s sequences aligned poorly to reference sequences

#353 Abelcanc3rhack3r closed 1 month ago
3
V2.5.3

#352 gavinmdouglas closed 3 months ago
0
ERROR collecting picrust2-2.5.2/tests/test_hsp.py

#351 UeenHuynh closed 3 months ago
1
Running picrust on full geomes

#350 annotatebio closed 5 months ago
3
Please help for picrust2 tutorial: cannot download the data set

#349 paiboon-aut closed 7 months ago
4
complex definition effect on abundance calculation

#348 danpal96 closed 4 months ago
1
During pytest place_seqs.py fails and cannot run the full pipeline

#347 rassanjorjo closed 4 months ago
6
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte

#346 abelTan131 closed 8 months ago
3
Gene family abundances per ASV rather than per sample

#345 antonkratz closed 8 months ago
1
PICRTUST 2 No such file or directory: 'hmmalign'

#344 kesava31 closed 8 months ago
2
Assign general function from KEGG pathway in pathways_out

#343 Dirrrrty closed 8 months ago
1
Macbook M1 chip pytest error (sqlite3 import??)

#342 SinaedaA closed 4 months ago
2
pytest fails 1 test on test_place_seqs.py

#341 mavino closed 8 months ago
2
Absolute abundance data for picrust2

#340 sankadinesh closed 4 months ago
3
Error runnig picrust due to cannot import name '_convert_node_to_root_polytomy'

#339 Zathzk closed 4 months ago
2
Running picrust on shotgun output from bracken

#338 hkaspersen closed 8 months ago
2
metagenome contributions analysis

#337 gonzalofe closed 8 months ago
2
running picrust2 on ITS

#336 ScarlettPegany closed 8 months ago
2
Customize database guidance

#335 dcm9123 closed 4 months ago
6
Question about previous filtering of otu table

#334 gonzalofe closed 8 months ago
3
maximum recursion depth exceeded while calling a Python object

#333 pangao1990 closed 1 year ago
0
help please : Error running picrust2_pipeline.py

#332 saassli21 closed 8 months ago
2
Installing problem into MacBook Air m1 terminal

#331 kumarrupin closed 4 months ago
9
tests/test_place_seqs.py shows failed status upon running the 'pytest' command

#330 chrissy005 closed 8 months ago
3
Is not like an issue but more like an aha moment

#329 lcamVz closed 8 months ago
3
picrust2_outputs

#328 WillErickson1 closed 8 months ago
2
picrust2 installation

#327 WillErickson1 closed 8 months ago
3
PicRust2 Error : number of statistically significant pathways exceeds the database's query limit.

#326 sm-arosh closed 8 months ago
5
Error in Picrust2_pipeline.py

#325 Mirabelle0116 closed 8 months ago
2
clarification on path_abun_contrib - contributory bacteria to metabolic profile

#324 EJS01 closed 1 year ago
1
metagenome_pipeline.py - flag to reduce amount of memory used

#323 RachBioHaz closed 8 months ago
2
Issue with using picrust2 pipeline for ITS sequences

#322 dixi06 closed 8 months ago
2
Does PiCrust2 generate 16S taxonomic classifications using your reference tree?

#321 carmennns2 closed 8 months ago
3
Error with hsp.py step with tutorial data

#320 sjackrel closed 1 year ago
3
Analyzing Oxford Nanopore 16s data with Picrust2

#319 AhmedAboushanab closed 8 months ago
2
3,751 input sequences aligned poorly to reference sequences and removed.

#318 hereformore closed 8 months ago
2