Planarian Anatomy Gene Expression Database
We manually curated the anatomical location of gene expression from publically available publications. In this respository we have our curation rules, our PAGE web code, our PAGE triplestore conversion code, our manual curations, as well as the tool we used to help us record our expression records.
We docmented the rules we used while reading and looking for expression records (X transcript is expressed in Y location). Read our curation rules.
Our raw curations, any manual edits, our cleaned curations, and code for cleaning are available. We also have the code for the shiny app that was used for collecting expression records.
The PHP and HTML code that we use on Planosphere for our PAGE searches are found in this repository.
The code for transforming curation and mapping data into a tripal store.
Visit the issue tracker and create a bug report, feature request, add questions or comments, add curations, or request a publication to be curated.