plant720 / Easy353

Easy353 is a tool for recovering Angiosperms353 gene set.
MIT License
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error message #2

Closed zilaijuand closed 1 year ago

zilaijuand commented 1 year ago

您好: 我在运行软件的时候,遇到了以下问题,麻烦向您请教一下如何解决,谢谢!

command line: easy353.py -1 E100071774_L01_UDB4_NT01_R1.fq.gz -2 E100071774_L01_UDB4_NT01_R2.fq.gz -r ~/software/Easy353-master/353_ref_Gesneriaceae/353gene/ -o E100071774_L01_UDB4_NT01_gzout_353 -k1 31 -k2 41 -t1 32 -t2 32 error message: usage: easy353.py [options] easy353.py: error: unrecognized arguments: -k1 31 -k2 41 -t1 32 -t2 32

command line: easy353.py -1 E100071770_L01_UDB103_DMDT01_R1.fq.gz -2 E100071770_L01_UDB103_DMDT01_R2.fq.gz -r ~/software/Easy353-master/353_ref_Gesneriaceae/353gene/ -o E100071770_L01_UDB103_DMDT01_gzout_353 -t1 32 -t2 32 error message: usage: easy353.py [options] easy353.py: error: unrecognized arguments: -t1 32 -t2 32

plant720 commented 1 year ago

软件的部分参数根据实际意义进行了修改,-k1 31 -k2 41 -t1 32 -t2 32应该换成 -fk 31 -ak 41 -ft 32 -at 32. 其中fk表示过滤时的kmer设置,ak表示拼接时的kmer设置;ft和at则分别是过滤和拼接时所用的线程数

zilaijuand commented 1 year ago

非常感谢!