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pocession
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aging_BalbC
Understanding how gut microbiome affect aging intestines through modulating methylation levels. This project is still ongoing. This repository is the code base for analysis.
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Tsunghan dev
#38
pocession
closed
4 months ago
0
Create volcano plot
#37
pocession
closed
4 months ago
0
Tsunghan dev
#36
pocession
closed
4 months ago
0
DMR annotation: gene and cpg islands
#35
pocession
closed
4 months ago
0
Tsunghan dev
#34
pocession
closed
4 months ago
0
DEG analysis
#33
pocession
closed
4 months ago
0
Tsunghan dev
#32
pocession
closed
4 months ago
0
Tsunghan dev
#31
pocession
closed
4 months ago
0
advanced annotation
#30
pocession
closed
4 months ago
0
Tsunghan dev
#29
pocession
closed
6 months ago
0
Tsunghan dev
#28
pocession
closed
6 months ago
0
Fix #25
#27
pocession
closed
6 months ago
0
Documents for DMR and annotated DMR
#26
pocession
closed
4 months ago
0
Functions for DMR
#25
pocession
closed
6 months ago
0
Methylation level - RNA expression correlation: should do this separately on promoter and introns
#24
pocession
closed
4 months ago
0
Machine learning
#23
pocession
closed
6 months ago
1
preprocess should be renamed to processing
#22
pocession
opened
8 months ago
0
Natural aging responsive genes
#21
pocession
closed
4 months ago
1
Tsunghan dev
#20
pocession
closed
8 months ago
0
upload RNAseq data, processed data
#19
pocession
closed
8 months ago
0
Tsunghan dev
#18
pocession
closed
8 months ago
0
Wrap up BETA analysis into R functions
#17
pocession
opened
8 months ago
0
Integrate DMR and DEG data
#16
pocession
closed
8 months ago
2
Tsunghan dev update getDMR.R
#15
pocession
closed
11 months ago
0
Tsunghan dev Determine 5hmc and 5mc level, add DMR
#14
pocession
closed
11 months ago
0
upload bash scripts for library preprocessing
#13
pocession
closed
11 months ago
0
Add a readme for scripts
#12
pocession
closed
11 months ago
0
Tsunghan dev Get the 5hmc and 5mc count
#11
pocession
closed
11 months ago
0
Tsunghan dev - upload reference papers
#10
pocession
closed
11 months ago
0
Use adjust.methylC() in methylKit to adjust the 5mc levels
#9
pocession
closed
11 months ago
1
Double check the numTs calculation
#8
pocession
closed
11 months ago
2
Update README.md
#7
pocession
closed
12 months ago
0
Tsunghan dev
#6
pocession
closed
12 months ago
0
Real 5mc calls
#5
pocession
closed
11 months ago
2
DMR
#4
pocession
closed
11 months ago
0
Tsunghan dev
#3
pocession
closed
12 months ago
0
Merge pull request #1 from pocession/tsunghan-dev
#2
pocession
closed
12 months ago
0
Pull request from Tsunghan dev
#1
pocession
closed
12 months ago
0