Open weshorton opened 5 years ago
Hi @weshorton -- did you manage to get ALICE to work on mouse data? I would also be interested. @pogorely, would you be able to advise?
Hello @weshorton, @jhb1980, @pogorely
Did you have any luck with using ALICE with murine data? It'd be great to know if it's possible.
Thanks a lot :)
I am attempting to run the ALICE pipeline with murine input data.
From what I've gathered, I'm currently missing two files that are present for human, but lack mouse equivalents:
OLGA_V_J_hum_beta.rda
VDJT.rda
VDJT.rda seems relatively straightforward to produce, but I'm not sure about the other.
I checked out the OLGA documentation and experimented with
olga-generate_sequences
andolga-compute_pgen
, but those outputs do not match up.Can you please provide details regarding the generation of
OLGA_V_J_hum_beta.rda
?