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pogorely / ALICE

Detecting TCR involved in immune responses from single RepSeq datasets
GNU General Public License v3.0
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Quick start example fails to run #9

Closed Tsmith-87 closed 5 years ago

Tsmith-87 commented 5 years ago

Hi Mikhail,

Really great work and ALICE would be a great tool to apply to my data set. I'm having trouble with the quick start example though. When I run:

S1_alice<-ALICE_pipeline(DTlist=S1,folder="S1_res",cores=1,iter=10,nrec=5e5)

I receive the error:

Error in D > 2 : comparison (6) is possible only for atomic and list types

I get this error on 2 different machines so I don't think this is to do with my R session. I also receive the same error when applying the code to the example data used by wyattmcdonnell in the 'some bugs?' issue.

Any advice on what could be causing this?

Thanks in advance,

Tasha

pogorely commented 5 years ago

Dear Tasha,

Thanks for the feedback! Sorry for this. There was a bug indeed, this should be fixed now, please download the new version and try again.

Misha

Tsmith-87 commented 5 years ago

Hi Misha,

Thank you for such a quick response. I downloaded the new version and the example runs perfectly now. Thanks for your help, really appreciated!

Tasha

pogorely commented 5 years ago

you are welcome!