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polio-nanopore
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piranha
GNU General Public License v3.0
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only show columns that we actually observe some hits for (i.e., across all barcodes - samples and controls).
#189
aineniamh
closed
7 months ago
0
Control virus sequences
#188
AShaw1802
closed
7 months ago
2
add supplied paths to configuration table in the sequencing report
#187
cathrnbp
closed
7 months ago
1
require fastq_pass at end of path in piranha GUI
#186
cathrnbp
opened
7 months ago
3
handle downstream fallout of haplotype pipeline
#185
aineniamh
closed
7 months ago
0
Haplo dev
#184
aineniamh
closed
7 months ago
0
pulling main
#183
aineniamh
closed
7 months ago
0
Phylo mods
#182
aineniamh
closed
7 months ago
0
Phylo mods
#181
aineniamh
closed
7 months ago
0
create a stable release for stool sequencing
#180
aineniamh
opened
8 months ago
0
some sort of assignment to emergence group confidence- bootstraps? num of mutations?
#179
aineniamh
opened
8 months ago
0
length filter reported for reads too
#178
aineniamh
opened
8 months ago
0
include description fields in header for phylo and metadata
#177
aineniamh
opened
8 months ago
0
write haplotype pipeline with Zoe's steps
#176
aineniamh
closed
7 months ago
1
parse directory of files, with fa and csv for local db supp files
#175
aineniamh
closed
7 months ago
1
local db out to also have csv file accompanying
#174
aineniamh
closed
7 months ago
1
phylo pipeline just add vdpv to local db
#173
aineniamh
closed
7 months ago
1
Add nextflow options and demo data
#172
rmcolq
closed
8 months ago
0
Paf parsing
#171
aineniamh
closed
8 months ago
0
runid to header
#170
aineniamh
closed
8 months ago
1
yaml parsing and dev info and citation box in report
#169
aineniamh
closed
8 months ago
0
make aln block len configurable
#168
aineniamh
closed
8 months ago
0
Paf parsing
#167
aineniamh
closed
8 months ago
0
only show cooccurance legend if plot there
#166
aineniamh
closed
8 months ago
1
offline report
#165
aineniamh
opened
8 months ago
0
local customisation
#164
aineniamh
opened
8 months ago
1
make clickable logo links and info about team at head of report
#163
aineniamh
closed
8 months ago
1
Piranha crashing after latest update
#162
AShaw1802
closed
8 months ago
11
adding var string if 'all id to header' flag used. otherwise don't in…
#161
aineniamh
closed
8 months ago
0
javier mapping issue (npev)
#160
aineniamh
opened
8 months ago
2
piranha header flag
#159
aineniamh
closed
8 months ago
1
Phylo dev
#158
aineniamh
closed
8 months ago
0
one report pr
#157
aineniamh
closed
8 months ago
0
default also colour by sabin, sabin-like vdpv in phylogeny
#156
aineniamh
closed
8 months ago
1
change query to sample, background, sabin 3 cat
#155
aineniamh
closed
8 months ago
0
colour sabin ref a diff colour in phylogeny
#154
aineniamh
closed
8 months ago
0
Phylo dev
#153
aineniamh
closed
9 months ago
0
put text strings into a config dictionary and template into report with either english or french
#152
aineniamh
closed
8 months ago
1
put configuration settings into the report
#151
aineniamh
closed
9 months ago
0
keep a running updated local database
#150
aineniamh
closed
8 months ago
1
refs_present.csv output issue
#149
ammaraziz
opened
10 months ago
4
optional phylo module that can tree build and display clusters in the report
#148
aineniamh
closed
9 months ago
0
useful feedback messages of stages for gui progress ingestion
#147
aineniamh
opened
10 months ago
0
for issue #142, modifying minimap2 mapping settings to allow seqeunce…
#146
aineniamh
closed
10 months ago
0
Multiple control dev for issue #138 and #88
#145
aineniamh
closed
10 months ago
1
Plateviz dev
#144
aineniamh
closed
10 months ago
1
Default plate orientation (PiranhaGUI)
#143
AShaw1802
closed
10 months ago
4
Mapping of highly divergent VDPVs
#142
AShaw1802
closed
10 months ago
1
Links to missing barcode reports
#141
rambaut
closed
10 months ago
1
unable to detect fastQ files during analysis
#140
ShadrackBar
closed
10 months ago
2
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