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polio-nanopore
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piranha
GNU General Public License v3.0
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Allow for missing samples for barcodes
#139
rambaut
closed
10 months ago
2
Allow multiple negatives/positives (including with same name)
#138
rambaut
closed
10 months ago
3
Process barcodes in order to show progress
#137
rambaut
opened
11 months ago
1
well orientation mod request
#136
aineniamh
closed
10 months ago
1
local build of dockerfile works, but dockerhub latest fails and dev w…
#135
rmcolq
closed
11 months ago
0
Updating vp1 reference with more recent seqs
#134
ZoeVance
closed
11 months ago
0
help get around this error
#133
kemripolio
closed
10 months ago
4
Small updates
#132
rmcolq
closed
11 months ago
0
Binned read group colouring in report Table 2 to signal if consensus could be calculated
#131
ebujaki
closed
8 months ago
1
Applied analysis options shown in output?
#130
ebujaki
closed
1 year ago
1
Accessibility of fastq_pass folder at default location
#129
ebujaki
closed
10 months ago
4
New Mappy version appears to prevent installation
#128
Desperate-Dan
closed
1 year ago
1
threshold for serotype 2 VDPV
#127
grassly
closed
1 year ago
1
mask out low coverage regions in non-vp1 pipeline
#126
aineniamh
opened
1 year ago
1
Feature requests
#125
aineniamh
closed
1 year ago
0
float of percentage min
#124
aineniamh
closed
1 year ago
0
Configuring with custom references - PanEV
#123
CatherineTroman
closed
7 months ago
6
Running pipeline on custom reference (whole genome)
#122
ammaraziz
opened
1 year ago
3
adding french updates from feedback issue #120
#121
aineniamh
closed
1 year ago
0
update french version with feedback
#120
aineniamh
closed
1 year ago
2
removing a12 incorrect ref as per issue 111
#119
aineniamh
closed
1 year ago
0
bypassing for indel variants
#118
aineniamh
closed
1 year ago
0
Insertion and Deletion calls in variants.csv error parse_variant_file()
#117
DarianHole
opened
1 year ago
3
Mapq threshold
#116
aineniamh
closed
1 year ago
0
add in grants and credits to run print oout
#115
aineniamh
closed
1 year ago
0
--protocol flag for preconfigured options
#114
aineniamh
closed
1 year ago
1
Before gathering, map and then stop when enough coverage has been reached
#113
aineniamh
closed
8 months ago
1
report variant quality score in barcode report
#112
aineniamh
closed
1 year ago
0
Whole genome reference fasta missing virsues
#111
ammaraziz
opened
1 year ago
6
Potential addition of Mapping Quality filter parameter to initial mapping step
#110
DarianHole
closed
1 year ago
4
check block of reads- calling c->t at position 17 for s3. gb ref and ref usedboth say ref is c, but pos 17 consistent for all samples.
#109
aineniamh
opened
1 year ago
0
Plate viz
#108
aineniamh
closed
1 year ago
0
Cooccurrance code redo
#107
aineniamh
closed
1 year ago
0
The TensorFlow library was compiled to use AVX instructions, but these aren't available on your machine.
#106
aineniamh
closed
1 year ago
1
nonpolioev bug
#105
aineniamh
closed
1 year ago
1
model selection for variant
#104
aineniamh
closed
1 year ago
1
plate viz
#103
aineniamh
closed
1 year ago
1
Adding mpileup usage to analyse bams for base percentages
#102
Desperate-Dan
closed
1 year ago
0
Read trimming for wg
#101
aineniamh
closed
1 year ago
0
merge main to read trimming b
#100
aineniamh
closed
1 year ago
0
Updating cns pipeline
#99
aineniamh
closed
1 year ago
0
handle primers for use in WG pipeline
#98
aineniamh
closed
1 year ago
1
better co-occurance plot
#97
aineniamh
closed
1 year ago
1
rework the variation calculation plot code- read from bam file instead of using gofasta
#96
aineniamh
closed
1 year ago
1
publishing fq files and cleaning up prompts and empty files in publis…
#95
aineniamh
closed
1 year ago
0
detailed csv now accepts optional fields from barcodes csv (will just…
#94
aineniamh
closed
1 year ago
0
pcent match to ref and detailed info about classification and reference in out csv
#93
aineniamh
closed
1 year ago
0
read count in downloadable wide format
#92
aineniamh
closed
1 year ago
0
Example report fasta links
#91
cathrnbp
closed
1 year ago
1
Resource allocation and HPC computing
#90
DarianHole
opened
1 year ago
1
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