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popsim-consortium
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analysis2
Analysis for the second consortium paper.
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add masking for `dfe.snake` workflow
#70
andrewkern
closed
3 months ago
2
add masking for `GONE`
#69
andrewkern
closed
2 years ago
2
Extracting syn-SFS only
#68
andrewkern
closed
2 years ago
7
fixed N(t) plots
#67
andrewkern
closed
2 years ago
3
list of final things to run the analysis on
#66
petrelharp
closed
3 months ago
1
swap msmc for msmc2
#65
chriscrsmith
closed
2 years ago
3
Cluster prof
#64
andrewkern
closed
2 years ago
2
Refactor repo structure?
#63
xin-huang
closed
3 months ago
2
document use on clusters
#62
andrewkern
closed
2 years ago
0
make resources specification in workflows consistent
#61
andrewkern
closed
2 years ago
0
Downloads
#60
andrewkern
closed
2 years ago
11
adding stuff to ignore
#59
andrewkern
closed
2 years ago
0
Macos
#58
xin-huang
closed
2 years ago
0
Compatibility with macOS M1
#57
lntran26
closed
3 months ago
6
swap msmc for msmc2
#56
chriscrsmith
closed
2 years ago
4
CI testing for the analysis2 workflow
#55
andrewkern
opened
2 years ago
0
Smc
#54
xin-huang
closed
2 years ago
2
Add GitHub Actions
#53
xin-huang
closed
2 years ago
3
Update environment.yml and ext/dfe_alpha_makefile_stdpopsim_patch
#52
xin-huang
closed
2 years ago
1
Update environment.yml and ext/dfe_alpha_makefile_stdpopsim_patch
#51
xin-huang
closed
2 years ago
0
Make sure smc++ works within our analysis2 env
#50
izabelcavassim
closed
3 months ago
6
Add multipopulation kind of analyses
#49
izabelcavassim
closed
3 months ago
3
Add msmc2 as a replacement of msmc
#48
izabelcavassim
closed
2 years ago
5
hot patch on main
#47
andrewkern
closed
2 years ago
0
implementing GONE pipeline
#46
chriscrsmith
closed
2 years ago
8
Author list
#45
mufernando
opened
2 years ago
5
Extracting neutral-SFS only
#44
izabelcavassim
closed
2 years ago
9
Update pipelines
#43
xin-huang
closed
2 years ago
7
added new yml file to allow easy creation of environment
#42
andrewkern
closed
2 years ago
0
update README with run instructions
#41
andrewkern
closed
3 months ago
6
Merge analysis flow
#40
andrewkern
closed
2 years ago
0
splitting mutation types using metadata
#39
mufernando
closed
2 years ago
3
restructure analysis
#38
andrewkern
closed
2 years ago
5
clean up of requirements and install instructions
#37
andrewkern
closed
2 years ago
0
splitting sfs by mutation types
#36
mufernando
closed
2 years ago
6
Investigating SFSs with selection
#35
izabelcavassim
closed
2 years ago
3
DFE benchmark
#34
xin-huang
closed
2 years ago
6
also run pipeline on constant-size population also
#33
petrelharp
closed
3 months ago
11
Identify selected mutation types from top-level metadata
#32
petrelharp
closed
2 years ago
1
Refactor
#31
xin-huang
closed
2 years ago
8
Adding files for demographic analyses with selection
#30
izabelcavassim
closed
2 years ago
10
check that analysis deals with neutral mutations appropriately
#29
petrelharp
closed
2 years ago
18
added back plots.py
#28
andrewkern
closed
2 years ago
0
redo of PR #17
#27
petrelharp
closed
2 years ago
1
refactoring out code
#25
andrewkern
closed
2 years ago
6
make requirements.txt file
#24
petrelharp
closed
2 years ago
5
Updated the readme example
#23
izabelcavassim
closed
2 years ago
1
remove simulated tree sequence from repository
#26
petrelharp
closed
2 years ago
6
separate dadi code into a new module
#22
petrelharp
closed
2 years ago
3
separate plotting code into a different module
#21
petrelharp
closed
2 years ago
1
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