scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
scPred is a general method to classify cells based on a low-dimensional
representation of gene expression (e.g. PCA).
For more details see our paper in Genome Biology:
scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
Installation
Before installing scPred, please install harmony as follows:
devtools::install_github("immunogenomics/harmony")You can install scPred via devtools as follows:
devtools::install_github("powellgenomicslab/scPred")How to use scPred
Visit the following vignette to start using scPred: