Suppose it were important to check if a given BW number, say 3.49, were always an Asp residue. It would be helpful to have a tool that searches data/sequences_aligned.txt for a given BW number in all protein sequences and returns back with a breakdown of which amino acids occur in that position at what frequencies.
Even better would be if it could list proteins that have at least one known agonist and have a different residue from some threshold like 80% of the list.
I'm thinking of an output format along the lines of:
Results for BW 3.49:
AA Qty % Proteins
-------------------------------------------
D 281 67
E 116 29
N 3 1 OR4W20 OR6P66 OR7x22
Q 1 <1 OR5J19
R 1 <1 OR3G81
(Note the above data are entirely fictional.)
Since in this hypothetical example, the two most common AAs represent more than the threshold 80%, all rows after the second list "aberrant" proteins.
Suppose it were important to check if a given BW number, say 3.49, were always an Asp residue. It would be helpful to have a tool that searches
data/sequences_aligned.txtfor a given BW number in all protein sequences and returns back with a breakdown of which amino acids occur in that position at what frequencies.Even better would be if it could list proteins that have at least one known agonist and have a different residue from some threshold like 80% of the list.
I'm thinking of an output format along the lines of:
(Note the above data are entirely fictional.)
Since in this hypothetical example, the two most common AAs represent more than the threshold 80%, all rows after the second list "aberrant" proteins.