privefl bigstatsr issues

privefl / bigstatsr

R package for statistical tools with big matrices stored on disk.

https://privefl.github.io/bigstatsr/

179 stars 30 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Can I use univLogReg to test additive effects?

#188 garyzhubc closed 3 weeks ago
1
Is it recommended to standardize X when using big_univLogReg?

#187 garyzhubc closed 1 month ago
1
Is there more information about the details of the Z-test in bigstatsr?

#186 garyzhubc closed 1 week ago
1
big_prodMat throws takes a really long time and finally throws an out-of-memory error

#184 shachideshpande closed 3 months ago
6
control MAF filtering?

#183 annilk closed 1 week ago
3
Extracting scores from each inner validation

#182 leocob closed 4 months ago
2
Error in `big_cor()` when using `block.size = 1`

#181 privefl opened 4 months ago
0
Scaling predictor variables both in training and test datasets

#180 annilk closed 4 months ago
5
Implementation of `dimnames` for FBM matrices

#179 dramanica closed 4 months ago
2
Issues with locking of the backing file

#178 dramanica closed 4 months ago
6
Catch variance equal to zero when scaling

#177 dramanica closed 5 months ago
4
How to cbind/rbind two big matrices that have the same dimension

#176 minhnd212 closed 1 week ago
13
How to use big_apply properly

#175 minhnd212 closed 1 week ago
4
Is there a function similar to rbind(), cbind() but for FBM objects

#174 minhnd212 closed 6 months ago
2
How to delete a .bk file during a session

#173 minhnd212 closed 6 months ago
2
The result is NA

#172 Knight1995 closed 5 months ago
12
Binary traits problem

#171 wangnanwei closed 5 months ago
1
Specify the location of the backing file resulting from `big_cor`

#170 fmorgante closed 9 months ago
8
How to ensure indices of response are aligned with the genotype matrix in big_univLogReg?

#169 garyzhubc closed 9 months ago
6
How to get p-value out of gwas<-big_univLinReg(...) object?

#168 garyzhubc closed 9 months ago
10
Variable selection

#167 dongleihu closed 10 months ago
6
Perform `colSums(X^2)` on FBM object

#166 fmorgante closed 11 months ago
2
Fixed and random effect

#165 dongleihu closed 4 months ago
6
Predicting using only 1 specific lambda value

#164 leocob closed 1 year ago
2
Estimation of model performance

#163 arnonl closed 1 year ago
1
OpenMP flag is not passed

#162 barracuda156 closed 5 months ago
19
Support for character type data?

#161 jarbet closed 1 year ago
1
adding columns to FBM

#160 chrisraynerr closed 1 year ago
4
Repeated measures (mixed model) GWAS

#159 chrisraynerr closed 1 year ago
5
Any matrix multiplication function support sparse matrix?

#158 JianqiaoWang closed 1 year ago
3
Greater use of generics

#156 multimeric closed 1 year ago
6
Read data using ‘bigsnpr’ package and run Linear mixed effect model using other packages

#155 NadNadi closed 1 year ago
3
Could I use `big_spLogReg()` for multi-class L1-regularized logistic regression?

#153 antonioggsousa closed 2 years ago
11
segfault with big_prodMat

#154 opain closed 2 years ago
2
Low CPU %?

#152 biona001 closed 2 years ago
3
How does dfmax work?

#151 biona001 closed 2 years ago
2
big_tcrossprodSelf: requested size is too large; suggest to enable ARMA_64BIT_WORD

#150 mkelcb closed 2 years ago
5
Bug in big_tcrossprodSelf: backingfile option missing

#149 mkelcb closed 2 years ago
5
How to efficiently normalized imputation probabilities of the genotype matrix to between zero and one?

#148 garyzhubc closed 2 years ago
1
Question about predictor to instance ratio when using big_spLinReg or big_spLogReg

#147 mfknie closed 2 years ago
3
Downloading bigstatsr not working on mac

#146 burtoand closed 2 years ago
1
Add convenience function to make own parameter 'fun.scaling'

#145 privefl closed 2 years ago
1
Error in docs for big_spLogReg {bigstatsr}

#143 Deleetdk closed 2 years ago
1
Task 1 failed: "'from' must be a finite number"

#142 malvarez-avalo closed 2 years ago
2
Reading existing .bk files

#141 yavyx closed 2 years ago
12
Help with interpreting the bigstatsr results

#140 annilk closed 2 years ago
7
big_prodMat Error: You can't have missing values in 'X'.

#139 jianvhuang closed 3 years ago
2
big_univLinReg() slow when subsetting rows/cols

#138 linoferreira closed 3 years ago
2
Seems big_univLogReg() is using too many cores.

#137 privefl closed 1 year ago
1
big_univLinReg does not support missing X values?

#136 nettam closed 2 years ago
1