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psychoinformatics-de
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datalad-hirni
DataLad extension for (semi-)automated, reproducible processing of (medical/neuro)imaging data
http://datalad.org
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Needs double quoting
#53
mih
closed
6 years ago
1
WIP: RF+ENH more on conversion
#52
bpoldrack
closed
6 years ago
0
NF: WIP spec edit webapp
#51
mih
closed
6 years ago
3
WIP: ENH: Add command for importing additional data
#50
bpoldrack
closed
6 years ago
8
Support arbitrary/custom converters
#49
mih
closed
6 years ago
0
Publish the DICOM demo datasets as a hirni study dataset
#48
mih
closed
5 years ago
2
Kill `spec2bids --target-dir`
#47
mih
closed
6 years ago
2
`create-study` should add basic README
#46
mih
closed
6 years ago
0
Do not aggregate DICOM ds metadata into BIDS dataset (by default)
#45
mih
closed
6 years ago
1
studyspec validator
#44
mih
opened
6 years ago
0
Implement 'procedure' for bids dataset setup
#43
mih
closed
6 years ago
2
WIP: ENH: Improve spec2bids
#42
bpoldrack
closed
6 years ago
2
Support acq- scan property
#41
mih
closed
6 years ago
4
heudiconv always add `age` column to participants tsv
#40
mih
opened
6 years ago
2
Notes on BIDS conversion
#39
mih
closed
6 years ago
1
Enable sidecar storage for spec2bids run calls
#38
mih
closed
6 years ago
2
with spec2bids --anonymize leave no ID info in subject
#37
mih
closed
6 years ago
1
Implement "additional data" importer
#36
mih
closed
6 years ago
0
Implement copy "converter"
#35
mih
closed
6 years ago
1
Convince heudiconv to not create tons of empty template files that could be "edited"
#34
mih
closed
5 years ago
2
Have demo special remote implementation to interface institutional storage
#33
mih
closed
5 years ago
1
Drop all extracted content in DICOM dataset after metadata extraction
#32
mih
closed
6 years ago
0
Prevent bloated .git/objects
#31
mih
closed
6 years ago
0
No uniform spec2bids(ok) results please
#30
mih
closed
6 years ago
0
datalad_hirni_import/ -> .git/datalad/hirni_import
#29
mih
closed
6 years ago
0
Runtime info
#28
mih
closed
6 years ago
3
Document purpose of studyspec fields
#27
mih
closed
6 years ago
1
Heuristic should ignore any image series that has modality==None
#26
mih
closed
6 years ago
1
Give studyspec field with BIDS semantics a bids_ name prefix
#25
mih
closed
6 years ago
1
Remove `data_type` field from studyspec
#24
mih
closed
6 years ago
1
`spec2bids` needs switch what subject IDs to use
#23
mih
closed
6 years ago
0
Resolve naming confusion
#22
mih
closed
6 years ago
0
WIP: Anonymize BIDS
#21
bpoldrack
closed
6 years ago
1
spec2bids requires manual `containers-add` with an undocumented container name
#20
mih
closed
5 years ago
6
Duplicate import-dcm crashes
#19
mih
closed
6 years ago
0
Missing import
#18
mih
closed
6 years ago
0
WIP: Fix recent issues
#17
bpoldrack
closed
6 years ago
1
Run records of the conversion must not contain identifying info
#16
mih
closed
6 years ago
5
Support notion of subject ID anonymization in studyspec
#15
mih
closed
6 years ago
2
studyspec.json not diff-friendly
#14
mih
closed
6 years ago
1
studyspec.json contains absolute paths
#13
mih
closed
6 years ago
2
spec2bids run record not reproducible
#12
mih
closed
6 years ago
3
singularity exec fails when dataset is in directory that contains a symlink
#11
mih
closed
5 years ago
4
`run` property default could be more clever
#10
mih
opened
6 years ago
2
Seemingly superfluous addition of a submodule on `import-dcm`
#9
mih
closed
6 years ago
5
Minor fixes
#8
bpoldrack
closed
6 years ago
1
Try to configure codecov
#7
bpoldrack
closed
6 years ago
1
Command modules need module-level docstring
#6
mih
closed
6 years ago
0
TST: Still fixing the tests ...
#5
bpoldrack
closed
6 years ago
1
studyspec.json should always be in Git
#4
mih
closed
6 years ago
0
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