Closed Szlemens0 closed 1 year ago
When following the installation guide for PyMedTermino2 (https://owlready2.readthedocs.io/en/latest/pymedtermino2.html), Python gives me the following error:
--------------------------------------------------------------------------- AttributeError Traceback (most recent call last) Cell In[7], line 1 ----> 1 import_umls("umls-2022AB-metathesaurus-full.zip", terminologies=["ICD10", "SNOMEDCT_US"]) File /opt/conda/lib/python3.10/site-packages/owlready2/pymedtermino2/umls.py:647, in import_umls(umls_zip_filename, terminologies, langs, fts_index, extract_groups, extract_attributes, extract_relations, extract_definitions, remove_suppressed) 643 default_world.save() 645 #default_world.graph.set_indexed(False) --> 647 importer = _Importer(PYM, terminologies, langs, extract_groups, extract_attributes, extract_relations, extract_definitions, remove_suppressed) 649 parsers = [ 650 ("MRRANK", parse_mrrank), 651 ("MRCONSO", parse_mrconso), 652 ] 653 if extract_definitions: parsers.append(("MRDEF", parse_mrdef)) File /opt/conda/lib/python3.10/site-packages/owlready2/pymedtermino2/umls.py:531, in _Importer.__init__(self, PYM, terminologies, langs, extract_groups, extract_attributes, extract_relations, extract_definitions, remove_suppressed) 528 self.indirect_props = Counter() 529 self.direct_props = Counter() --> 531 self.objs, self.datas, self.on_prepare_obj, self.on_prepare_data, self.insert_objs, self.insert_datas, self.new_blank_node, self._abbreviate, self.on_finish = PYM.graph.create_parse_func(delete_existing_triples = False) 533 if self.extract_cui: 534 self.CUI = self._abbreviate("http://pym/SRC/CUI") AttributeError: 'SubGraph' object has no attribute 'create_parse_func'
I am using owlready2-0.41, Python 3.10.8 and the umls-2022AB-metathesaurus-full.zip UMLS data.
Downgrading to owlready2-0.40 fixed the problem.
When following the installation guide for PyMedTermino2 (https://owlready2.readthedocs.io/en/latest/pymedtermino2.html), Python gives me the following error:
I am using owlready2-0.41, Python 3.10.8 and the umls-2022AB-metathesaurus-full.zip UMLS data.