A utility for loading data from repositories of BEL documents with PyBEL [1]_.
bel_repository can be installed from PyPI with the following command:
.. code-block:: bash
$ pip install bel-repository
The latest version can be installed from GitHub with:
.. code-block:: bash
$ pip install git+https://github.com/pybel/bel-repository.git
.. code-block:: python
from typing import Mapping
from bel_repository import BELRepository
from pybel import BELGraph
# Build a repository by giving a folder
bel_repository = BELRepository('/path/to/folder/with/bel/')
# Get a mapping from paths to graphs
graphs: Mapping[str, BELGraph] = bel_repository.get_graphs()
# Get a combine graph
graph: BELGraph = bel_repository.get_graph()Each of these repositories has BEL content that can be pip installed:
More publicly available BEL content can be found in the listing in
this blog post <https://cthoyt.com/2020/04/30/public-bel-content.html>_.
.. [1] Hoyt, C. T., et al. (2017). PyBEL: a computational framework for Biological Expression Language <https://doi.org/10.1093/bioinformatics/btx660>_. Bioinformatics (Oxford, England), 34(4), 703–704.
.. |build| image:: https://travis-ci.com/pybel/bel-repository.svg?branch=master :target: https://travis-ci.com/pybel/bel-repository
.. |python_versions| image:: https://img.shields.io/pypi/pyversions/bel_repository.svg :alt: Stable Supported Python Versions
.. |pypi_version| image:: https://img.shields.io/pypi/v/bel_repository.svg :alt: Current version on PyPI
.. |pypi_license| image:: https://img.shields.io/pypi/l/bel_repository.svg :alt: License
.. |zenodo| image:: https://zenodo.org/badge/162814995.svg :target: https://zenodo.org/badge/latestdoi/162814995