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qbic-pipelines
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rnadeseq
Differential gene expression analysis and pathway analysis of RNAseq data
MIT License
32
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20
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Fix contrast pairs
#250
WackerO
opened
2 months ago
1
Release 2.4
#249
WackerO
closed
2 months ago
2
4 - Bumped versions to 2.4 for next release
#248
WackerO
closed
2 months ago
1
2 - Changed/removed some report texts
#247
WackerO
closed
2 months ago
1
1 - Changed pipeline version to dev
#246
WackerO
closed
2 months ago
1
3 - Write background list
#245
WackerO
closed
2 months ago
2
Release 2.3 - This time for real
#244
WackerO
closed
3 months ago
3
Fix report issue with missing logo
#243
WackerO
closed
3 months ago
1
Fix path issue with report file
#242
WackerO
closed
3 months ago
1
Revert branch.yml changes
#241
WackerO
closed
3 months ago
1
third attempt at fixing branch protection
#240
WackerO
closed
3 months ago
0
second attempt at fixing branch protection
#239
WackerO
closed
3 months ago
1
Fix branch protection bug
#238
WackerO
closed
3 months ago
1
Add distance info for heatmaps, add heatmap tables, change volcano jitter to points
#237
WackerO
closed
3 months ago
1
Fix new multiqc
#236
WackerO
closed
4 months ago
2
Template update for nf-core/tools v2.14.1
#235
WackerO
closed
4 months ago
2
Undid permission changes from previous PR 225
#234
WackerO
closed
4 months ago
2
Release 2.3
#233
WackerO
closed
3 months ago
3
Version changes for release 2.3
#232
WackerO
closed
4 months ago
1
Some fixes in report
#231
WackerO
closed
5 months ago
2
Reduce pathway heatmaps to relevant samples
#230
WackerO
opened
5 months ago
0
Add heatmap cluster param, fix enrichment plot labels, use correct plotMA
#229
WackerO
closed
5 months ago
1
Update RNAseq_report.Rmd
#228
qbicStefanC
closed
5 months ago
2
Dev-update-DE-analysis-info
#227
qbicStefanC
closed
6 months ago
2
Multiqc update
#226
WackerO
closed
5 months ago
6
Heatmap error, datasources, shorten filenames
#225
WackerO
closed
7 months ago
2
Order the pathway heatmaps according to condition
#224
LaurenceKuhl
closed
5 months ago
4
Save pipeline info to zip
#223
WackerO
closed
5 months ago
1
Use --relevel parameter for PCA plotting
#222
qbicStefanC
opened
10 months ago
1
Fix non-conformable arrays bug
#221
WackerO
closed
5 months ago
1
Add suggestions for release 2.2
#220
WackerO
closed
1 year ago
1
Release 2.2
#219
WackerO
closed
1 year ago
3
Software version bumps for release 2.2
#218
WackerO
closed
1 year ago
1
Replace missing GTF gene_names with IDs
#217
WackerO
closed
1 year ago
1
Genes without 'gene_name' wont be shown in Volcano plot
#216
d4straub
closed
1 year ago
3
Added boxplots after batcheffect; boxplots now from transformed data; boxplot titles and filenames now also with genename; increased threshold before overlapping PCA labels are hidden
#215
WackerO
closed
1 year ago
1
Follow-up smrnaseq PR; container update; heatmap sort; more precise batch effect documentation
#214
WackerO
closed
1 year ago
1
Add smrnaseq functionality
#213
WackerO
closed
1 year ago
1
Gostplot fix, comp methods change
#212
WackerO
closed
1 year ago
2
Fixed heatmaps and removed kaleido from container
#211
WackerO
closed
1 year ago
5
If no enriched pathway is found, it simply states so instead of throwing an error
#210
jonoave
closed
1 year ago
1
Template update - Chromium Falcon
#209
WackerO
closed
1 year ago
2
fixed relevel bug
#208
WackerO
closed
1 year ago
3
Fixed bug with metadata/counts check
#207
WackerO
closed
1 year ago
1
Added logic for transformation method
#206
WackerO
closed
1 year ago
3
Template update (v2.8 - Ruthenium Monkey)
#205
WackerO
closed
1 year ago
1
Changed relevel github path to qbic-pipelines
#204
WackerO
closed
1 year ago
1
Switch dockerhub to ghcr
#203
WackerO
closed
1 year ago
6
Adding background list to PA
#202
WackerO
closed
1 year ago
1
Include background gene list for pathway analysis
#201
ggabernet
closed
1 year ago
1
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