Update NF-Core Parser to use new NF-Core output - Githubissues

qbicsoftware / core-utils-lib

Library containing core classes and utilities that are independent of a portal.

MIT License

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Update NF-Core Parser to use new NF-Core output #104

Closed Steffengreiner closed 2 years ago

Steffengreiner commented 2 years ago

What was changed Makes the nf-core result output parser ready for sarekv3 file strucure:

Changed file suffix of software_versions.csv to software_versions.yml
Changed file suffix of execution_report.txt to execution_report.html
Removed pipeline_report.txt

Additional Information Currently waiting for the updated datastructure in the data-model-lib 2.20.0 release before this can be merged(#324)

See DM-480 for zendesk ticket and additional information