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qbicsoftware / core-utils-lib

Library containing core classes and utilities that are independent of a portal.
MIT License
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Feature/nf pipeline parser #47

Closed Steffengreiner closed 3 years ago

Steffengreiner commented 3 years ago

Introduced Changes

This PR will introduce a parser for the output of nf-core pipelines into a json based format.

Blocked by

  1. It has to be determined how the versioning in core-utils-lib will continue(as of now master and development branch have diverged because of different java necessities) --> Merge Release 1.7.2 PR to Master and merge Master into this Branch before Merging this Branch

  2. There should be a dedicated data-model containing the structure of the nf-core pipeline output. (As soon as it's introduced the JSON String output will be changed to that model)

jenniferboedker commented 3 years ago

The PR should be based on development and go to development. Your mentioned issues will be solved in other PRs. I will close this PR and moved your changes to #51