qbicsoftware variantstore-service issues

qbicsoftware / variantstore-service

The Variantstore is a Java/Groovy-based service application implemented using the Micronaut framework and enables storage and access to information on genomic variants and metadata from a connected database via a RESTful API.

MIT License

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issues

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Bump org.postgresql:postgresql from 42.5.1 to 42.7.2

#68 dependabot[bot] opened 9 months ago
0
Bump io.micronaut:micronaut-http-server-netty from 3.7.4 to 3.8.3

#67 dependabot[bot] opened 9 months ago
0
Release 1.1.0

#66 christopher-mohr closed 1 year ago
0
Bump htsjdk from 2.22.0 to 3.0.1

#65 dependabot[bot] closed 1 year ago
1
Update dependencies change logging

#64 christopher-mohr closed 2 years ago
0
update dependencies

#63 christopher-mohr closed 2 years ago
0
add project controller and respective functionality

#62 christopher-mohr closed 2 years ago
0
Fix variant import, improve

#61 christopher-mohr closed 2 years ago
0
Variant registration fails due to unavailable information

#60 christopher-mohr closed 2 years ago
1
Fix OAuth configuration

#59 christopher-mohr closed 2 years ago
0
Add server-side status view

#58 christopher-mohr closed 2 years ago
0
Add github action workflow to create and publish docker image

#57 christopher-mohr closed 1 year ago
0
GitHub markdown documentation

#56 christopher-mohr closed 2 years ago
0
Fix remaining todos, improve docs

#55 christopher-mohr closed 2 years ago
0
Fix variant import test in Github Actions

#54 christopher-mohr closed 2 years ago
0
Add ensembl import for postgres

#53 christopher-mohr closed 2 years ago
0
Re-add transactions for variant import

#52 christopher-mohr closed 2 years ago
0
Adapt CI/CD for mariadb/postgresql interfaces

#51 christopher-mohr closed 2 years ago
0
Add postgresql support

#50 christopher-mohr closed 2 years ago
0
Bump micronaut-http-server-netty from 1.3.6 to 2.5.9

#49 dependabot[bot] closed 1 year ago
1
Add GitHub actions workflow

#48 christopher-mohr closed 3 years ago
2
Maven clean package - Error in Packaging Tests

#47 muellerdo opened 3 years ago
11
One-Click deployment via docker-compose

#46 muellerdo closed 3 years ago
5
Release/1.0.1

#45 christopher-mohr closed 3 years ago
0
Patch Release 1.0.1

#44 christopher-mohr closed 3 years ago
1
Fix Ensembl gene information import

#43 christopher-mohr closed 3 years ago
0
Gene information upload by .gff3 fails if reference genome version in file name contains Ensembl version

#42 christopher-mohr closed 3 years ago
1
Gene information (.gff3) upload fails due to missing gene constructor

#41 christopher-mohr closed 3 years ago
1
Improve documentation and error handling for VCF import

#40 christopher-mohr closed 3 years ago
1
Merge changes of release 1.0.0

#39 christopher-mohr closed 3 years ago
0
VariantstoreStorage implementation for PostgreSQL

#38 christopher-mohr closed 2 years ago
1
Variantstore database schema for PostgreSQL

#37 christopher-mohr closed 2 years ago
1
Release 1.0.0

#36 christopher-mohr closed 3 years ago
0
Add test.yml

#35 christopher-mohr closed 3 years ago
0
Prepare release 1.0.0

#34 christopher-mohr closed 3 years ago
0
Change package name from oncostore to variantstore

#33 christopher-mohr closed 3 years ago
0
Remove parent pom, adapt dependencies and plugins accordingly

#32 christopher-mohr closed 3 years ago
1
Update docs

#31 christopher-mohr closed 3 years ago
0
Improve sample metadata handling and import performance

#30 christopher-mohr closed 3 years ago
0
Some fixes on database and service layer

#29 christopher-mohr closed 4 years ago
0
Optimize request functionality

#28 christopher-mohr closed 4 years ago
0
Optimize import of gene information and table indices

#27 christopher-mohr closed 4 years ago
0
Default value for userroles, small improvements

#26 christopher-mohr closed 4 years ago
0
Initial implementation of fhir export

#25 christopher-mohr closed 4 years ago
1
Add functionality for VCF export

#24 christopher-mohr closed 4 years ago
2
Use testcontainers for tests

#23 christopher-mohr closed 4 years ago
1
Docker for development testing

#22 muellerdo closed 4 years ago
3
Packaging error of newest development branch

#21 muellerdo closed 4 years ago
5
Startup fails due to java.sql.SQLException: Too many connections

#20 muellerdo closed 3 years ago
5
Extend data model with VCF INFO column and genotype information

#19 christopher-mohr closed 4 years ago
0